LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste7g01638	TTTCAGCCCTCATTCAATGCTTTACCAAACTCACCATCCTCCACTCTTTCAATTTCATCCCTTCACTCCTTCCACCACCCCTCACCTTTCTACAACCCCATCATCTCAACCTTCTCCTCTTCTTCTCTCTCAGGCGGAAAAAACTGAAATGGAGTGTTTGGAAGCAGCGTTGAAGAGCAGTTTTAGGAAAGACATGGCTCTCAAACTAAGCCCACAAGAGGAGTTGTCGGCGCTTACAGTTCAAAACGTTGCTTCTTGCGACGACTTCTTCGTTGACGACCTTCTTGACTTTTCTTCGCTCCTCGAAAACGAAGAACCCGACCAACACAACCTCGACTCTACCTCTGTTTCCCCTCTCAACAAAAACCAGGAAATTTACAATTTTAACCCCTCCCTCGACAACGACAATTTCAACGGCGAACTCACTGTTCCGGCCGAGGAGGTTGCGGACTTGGAATGGCTCTCTCATTTCGTCGAAGATTCTTTCTCCGAACACTCCCTTACCTTCCCCGTGACTGTCACCGAGAGCAAGGAGAAGCCACCGGAACCGGGAAACGCCGGTTTCACTTTCAAAACCCCCGTTCCGGCCAAGGCCAGGAGCAAGCGAACGCGAACCGGTGTTCGGGTTTGGCCTCAACGCTCGCCCTCGTTCACCGACACCTCATCGACGTCCACAACCTCGTCCTCTTCCTCCTCCTCTCCGCCGAGCCCGTTGCTAATTTGCGCCGCGGCGACCAAAGACCACGACGCCAGAGTCAAAAAAAGAGCCTCGGTCGACGGCGGCGCGGCCCGCCGCTGCAGTCATTGCGGCGTTCAGAAAACCCCTCAGTGGCGAACCGGACCGCTTGGAGCCAAGACTCTATGCAACGCGTGCGGCGTTAGGTTTAAATCGGGTCGGTTATTACCCGAGTATAGACCCGCATGTAGCCCCACTTTCTCTAGCGAGTTGCACTCGAACCACCACCGGAAAGTGCTGGAGATGCGGCGGAAGAAGGAGGAGGCGGATGAACCGGTCCCCGGTTCGACACCGTCGGTTCTCGGTTTTTGA	1048	0.5429	MLYQTHHPPLFQFHPFTPSTTPHLSTTPSSQPSPLLLSQAEKTEMECLEAALKSSFRKDMALKLSPQEELSALTVQNVASCDDFFVDDLLDFSSLLENEEPDQHNLDSTSVSPLNKNQEIYNFNPSLDNDNFNGELTVPAEEVADLEWLSHFVEDSFSEHSLTFPVTVTESKEKPPEPGNAGFTFKTPVPAKARSKRTRTGVRVWPQRSPSFTDTSSTSTTSSSSSSSPPSPLLICAAATKDHDARVKKRASVDGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEEADEPVPGSTPSVLGF	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste7g01638	343	MobiDBLite	consensus disorder prediction	202	233	-	-
	Pste7g01638	343	MobiDBLite	consensus disorder prediction	14	33	-	-
	Pste7g01638	343	FunFam	GATA transcription factor	251	333	-	-
	Pste7g01638	343	MobiDBLite	consensus disorder prediction	323	343	-	-
	Pste7g01638	343	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	253	317	-	-
	Pste7g01638	343	ProSitePatterns	GATA-type zinc finger domain.	261	286	IPR000679	GO:0006355\|GO:0043565
	Pste7g01638	343	ProSiteProfiles	GATA-type zinc finger domain profile.	255	291	IPR000679	GO:0006355\|GO:0043565
	Pste7g01638	343	Pfam	GATA zinc finger	261	295	IPR000679	GO:0006355\|GO:0043565
	Pste7g01638	343	Gene3D	-	254	329	IPR013088	GO:0006355\|GO:0008270
	Pste7g01638	343	PANTHER	GATA TRANSCRIPTION FACTOR	75	331	-	-
	Pste7g01638	343	SMART	GATA_3	255	309	IPR000679	GO:0006355\|GO:0043565
	Pste7g01638	343	CDD	ZnF_GATA	260	308	IPR000679	GO:0006355\|GO:0043565
	Pste7g01638	343	MobiDBLite	consensus disorder prediction	168	234	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste7g01638	Pste-Chr7	15243732	15244993	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste7g01638	49	327	C2C2-Gata Transcription Factor Family	AT5G66320	48.923	5.05e-71	223

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Pste7g01638		GATA	4.4e-16	CL0167