Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01603 AAAACTGGTAACTCACTTCAGTTCTGATTTTCAGCATAGGTTTAACTCTCATTCACTAGATCAACCACTATTGAGTTTTGAAAATTGATCCATCATGAGAACTCGAAATGCTGATTCCGCTTCCAAATCCGCTACCTCTAAGAAGACGCCGCCGCCGCCGAGGAAATCCCCTGCGGCCAAGCGCACCGCCGCCAAAACTAGGAGCACCAAAAAGAAGGACCTCTCGCCCGCACCCGAATCCAACCCCGATCAATCCCCTCTAGTGGAGCAGAAATCGTTAGGCAGTGGTAGCGGTACCAAATCTGCTGGGAAAAAGAAGGCTCCAGGGAGACCTAGAGTTAAAGCCGTTGATACACCGGATTTGGAAGAACAATGTGAGGTAGTAGCTGGTGAAACTGTAATTGAAGATAATACTGAGGCTGCAGAGAAAGTGGAATGTGTTTATGCTGAGAATATTGAGGGGGAGCAAGGTGTTTGCTCTGTTGGATTATCTGATGAGGTGGAACTAAAGTTGATGGAGGTGGATGAACCTGTTGTTGAAAGGGTCTGTGAATCGGTGGAAAAGGGAAGTTGCGTCATGGACGTGGATGGAAGTGCTTCTCAGGATGCTTCTGTTTCTTTTAAGCGACCTGGACGGCCCATTATGGATCTCAATATATCTGCGGATAGTGAAGATCAAGAGGGGGACAGAGGAAAGGAAGAGTTGAAAGATCAAGAGGGGGACAAAGGGAAGGAAGAGTTGAAAGAACTGGAAGGAGACAGTGGAAAGGAAGAGTTGAAGGAACTGGATGGAGAGCAGGGTAAAAAAGAGTTGAAAGAACTGGATGAAGGGACAGATAAGGAAGAGTTCAAAGAATTGGATGAAGAGAAAGGTAAGGAAGAGTTGAAAGAACAGGAAGGAGAAAAAGGTCAGGAAGAATTTAAAGAACCGGAAGGAGAGAAAGGTAAGGAAGAATTTAATGAACTGGAAGGAGAGAAAGGTAAGGAAGAATTTAAAGAGCAAGAAGGAGAGAAAGGTAAGGAGGTAAGGTTGACAGAAGAGGAAGGACAGAAAAGAGAGGTTGTGTTGAAAGAACTTGAAGTAGACAAAGGAAAGGAAAACTTGACTGAGCAGGAGCCACAGAAAACAAAGGGAGATGAAACAAACCTTTTTGGACATAAAGAGAACACTGAGTCTTTTGGTGTAGATGTGAAAGTCCAGATGCAAAAAGGGGATGCTATTCCCACTGAAGATGTTGTTGAAGGAACTAAGAATGGAGAAAAGTTAGATCTTGATGAACAAGGGAGAGTGGAGTTTGATGAAGAAGATCCTGAGGAAGATCCAGAGGAACTTCCAGAAGAAACTGAGGCATTGGATGAGGAGCATAGGGAATTGGAGGCCATTGCAAATCAGCGAAAGATTAAAAAAGAACATGAGATTTTTGTTGGTGGTTTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATAGGGGAGATAGTTGAAGTAAGGCTGCATAAAAATTCATCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACACGGTAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACAAAAGAAGCTATTAAACAGAAGCTGAACGATTATGGTATTGAAGGGGTTGAAAATATTACACTAGTCCCAGATGTTCAACATGAGGGCTTGAGCAGGGGGTTTGCATTCCTAGAGTTCTCTTGTCATGCTGATGCCATGCTTGCTTATAAGAGGCTTCAAAAGCCTGATGTTATCTTTGGCCATGCCGATCGAACTGCCAAGGTAGCCTTTGCTGAACCAATACGTGAGCCAGACCCAGAGGTAATGGCTCAGGTGAAGTCTGTATTTATCAATGGTCTCCCTCCACATTGGGATGAAGATCATGTGAGGGAGCTGTTTAAATCTTATGGTGAAATTGTGAGAATTGTGCTAGCACGGAATATGTCTACAGCCAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTTTAGCTTGTGTTGATGGCGTAAATAAATCGGAATTGGGTGATGGGGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAACCCTCTACCTAAAACACAAGCTGTCAAAGGTGGAAGGGGGTTTGGGCGAGGGAGACAGCCCTTCAACAACAGAGGAAGTTTCAACAGGGGCAGGGGTTTCTATCATGGTGGACACAGTCAAATTGGAAGAATGGGTTTTCGGGATGACCTTGATTTTAATATGCATCCGGATTTCCGTCAAAGGCAATTTGGACCACAAGGAGCTGGGAGGGGTGGACATTATGCAGCTAGCCGAGGTGCTGCATTTGCTGGACCATCTAGACCTTATCATGGTAGACCATGGTATGGTATCCCTGATGGAGGTCCTAGTGAGCCTATTCCTCCAAGGAGACCATACTCCCCAGGAGGACAGTTTGACATGCCTTTTATGGGAAGGCATTTTGATGATCCATATCTATACGATGACAATATGCATGGAATGAAACGTCCATTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGACTTCGTCCTCGATTGGATTATGCAGAACCGCCAATATTTCATGGAACTCATCACCATGATTCTTTTGGAGCTAGCAGCAGACAGTACCCACCTGACTATTACGGTTCTGATTATGGTAGAGGTTCATATTCATCTTATTATGGGGGTGATGGCTCACATGGGCATGGATACTACTATTAGAGTGATGAATCTTTTGGTAAGGATTATTTTTAGAATTTTATTTTCTAATTTGCAGCAGGAAATTCTCTTATTGTTTTGTGGACCTTTATTCTT 2938 0.4329 MRTRNADSASKSATSKKTPPPPRKSPAAKRTAAKTRSTKKKDLSPAPESNPDQSPLVEQKSLGSGSGTKSAGKKKAPGRPRVKAVDTPDLEEQCEVVAGETVIEDNTEAAEKVECVYAENIEGEQGVCSVGLSDEVELKLMEVDEPVVERVCESVEKGSCVMDVDGSASQDASVSFKRPGRPIMDLNISADSEDQEGDRGKEELKDQEGDKGKEELKELEGDSGKEELKELDGEQGKKELKELDEGTDKEEFKELDEEKGKEELKEQEGEKGQEEFKEPEGEKGKEEFNELEGEKGKEEFKEQEGEKGKEVRLTEEEGQKREVVLKELEVDKGKENLTEQEPQKTKGDETNLFGHKENTESFGVDVKVQMQKGDAIPTEDVVEGTKNGEKLDLDEQGRVEFDEEDPEEDPEELPEETEALDEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLNDYGIEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHADRTAKVAFAEPIREPDPEVMAQVKSVFINGLPPHWDEDHVRELFKSYGEIVRIVLARNMSTAKRKDYGFVDFSTHEAALACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGRGFGRGRQPFNNRGSFNRGRGFYHGGHSQIGRMGFRDDLDFNMHPDFRQRQFGPQGAGRGGHYAASRGAAFAGPSRPYHGRPWYGIPDGGPSEPIPPRRPYSPGGQFDMPFMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYAEPPIFHGTHHHDSFGASSRQYPPDYYGSDYGRGSYSSYYGGDGSHGHGYYY 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01603 916 Gene3D - 377 514 IPR012677 -
Pste7g01603 916 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 440 518 IPR000504 GO:0003723
Pste7g01603 916 MobiDBLite consensus disorder prediction 702 729 - -
Pste7g01603 916 SMART rrm1_1 521 601 IPR000504 GO:0003723
Pste7g01603 916 SMART rrm1_1 441 514 IPR000504 GO:0003723
Pste7g01603 916 SMART rrm1_1 619 694 IPR000504 GO:0003723
Pste7g01603 916 Gene3D - 519 604 IPR012677 -
Pste7g01603 916 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 620 686 IPR000504 GO:0003723
Pste7g01603 916 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 442 510 IPR000504 GO:0003723
Pste7g01603 916 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 522 593 IPR000504 GO:0003723
Pste7g01603 916 CDD RRM_SF 442 511 - -
Pste7g01603 916 MobiDBLite consensus disorder prediction 398 422 - -
Pste7g01603 916 MobiDBLite consensus disorder prediction 47 68 - -
Pste7g01603 916 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 618 698 IPR000504 GO:0003723
Pste7g01603 916 Gene3D - 607 739 IPR012677 -
Pste7g01603 916 MobiDBLite consensus disorder prediction 192 315 - -
Pste7g01603 916 MobiDBLite consensus disorder prediction 331 355 - -
Pste7g01603 916 FunFam Heterogeneous nuclear ribonucleoprotein Q 605 737 - -
Pste7g01603 916 SUPERFAMILY RNA-binding domain, RBD 441 585 IPR035979 GO:0003676
Pste7g01603 916 MobiDBLite consensus disorder prediction 383 397 - -
Pste7g01603 916 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 209 916 - -
Pste7g01603 916 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 520 605 IPR000504 GO:0003723
Pste7g01603 916 FunFam Heterogeneous nuclear ribonucleoprotein Q 391 514 - -
Pste7g01603 916 FunFam Heterogeneous nuclear ribonucleoprotein Q 520 604 - -
Pste7g01603 916 MobiDBLite consensus disorder prediction 165 315 - -
Pste7g01603 916 CDD RRM_SF 620 694 - -
Pste7g01603 916 MobiDBLite consensus disorder prediction 331 422 - -
Pste7g01603 916 SUPERFAMILY RNA-binding domain, RBD 610 724 IPR035979 GO:0003676
Pste7g01603 916 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01603 Pste-Chr7 14807624 14813500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01603 441 686 Eukaryotic Initiation Factors Gene Family AT2G23350 23.715 2.63e-16 81.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01603 7 14807624 14813500 Pste7g01603 7 14807624 14813500 ECH