LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste7g01562	AAAGAGAGAGGCTCCTGAGTTGTAACGAATGAAACCACACTTTAGTATATAGCTTGCAGTCGTTATTTTCCAAGTTTGAATTGAATGACGCACAAATCAACTCTGAATCTATGTCAACGGAACCACCAAAGCGCCACCAACGGCAGTCGGAGAACGCCACCGCCGGCGCCGCAGCCGCATTAACCACCATCGTCGTTATGCATCCCCTCGATGTTGTCCGAACTAGGTTTCAAGTTAACGATGGTCGACTTTCTCATCTTCCAATTTACAAGAACACTTTTCACGCCATTTCCACCATTGCTCGCTCCGAGGGATTAAGAGGTTTATATGCTGGCTTTCTTCCTGGGGTTCTTGGGTCAACTATTTCATTGGGTTTATATTTATTTTTTTATGACAAAGCCAAGCAGAGATATGCAAGGAACCAGGAGGGGAAGTTGAGCCCAGGTCTGCATCTTGCCTCAGCTGTTGAAGCAGAAGGAGAGATGAAAGCCGATACAATGAAGGTTTGCTTTTGCACGAATCCTGTATGGCTAGTAAAGACAAGATTGCAGCTTCAAACTCCACTTCATCAGAGGCGACCGTACTCTGGGCTTTATGATGCATTTAAGACCATAATGAGGGAAGAAGGATTTACTGCACTTTACAGAGGGATTGTTCCTAGTCTATTTCTGGTCTCTCGTAGTGCTGTTCAGCTCACAGCATATGAGGAGCTTCGTAAAGTTATTGTTGATTTTAAGAGTAAGGGAAGTACAGTAAATCATCAAAACCCTGATAAATTGCTGAATTCTGTTGATTATGCTGTTCTAGGAGCAACATCTAAACTTGCTGCAATACTTCTAACCTATCCATTTCAGGTTATACGGGCTCGATTGCAGCAACGTCCCAGTGGTGATGGGGTTCCAAGATATATGGACACTTTGCATGTTGTGAAAGAAACTGCACGATTTGAAGGTGTCCGAGGTTTTTACAAAGGAATTACCCCAAACCTCTTGAAAAATGCTCCTGCTTCTTCAATAACATTTATTGTTTATGAAAATGTTCTAAAATTGCTTAAAGTGGCTAAAAGGAATGACTGAGTATTCCATTTTTCTTCCTGATTCTTTCCTTTCCGCTTATTGTTTAATCTCGTTTCTTAATTGATATTTGTAGTTGAAAATGACATTTTCCCC	1169	0.4166	MSTEPPKRHQRQSENATAGAAAALTTIVVMHPLDVVRTRFQVNDGRLSHLPIYKNTFHAISTIARSEGLRGLYAGFLPGVLGSTISLGLYLFFYDKAKQRYARNQEGKLSPGLHLASAVEAEGEMKADTMKVCFCTNPVWLVKTRLQLQTPLHQRRPYSGLYDAFKTIMREEGFTALYRGIVPSLFLVSRSAVQLTAYEELRKVIVDFKSKGSTVNHQNPDKLLNSVDYAVLGATSKLAAILLTYPFQVIRARLQQRPSGDGVPRYMDTLHVVKETARFEGVRGFYKGITPNLLKNAPASSITFIVYENVLKLLKVAKRND	321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste7g01562	321	Coils	Coil	319	321	-	-
	Pste7g01562	321	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	12	316	IPR044712	GO:0006862\|GO:0055085
	Pste7g01562	321	Pfam	Mitochondrial carrier protein	227	315	IPR018108	-
	Pste7g01562	321	Pfam	Mitochondrial carrier protein	14	104	IPR018108	-
	Pste7g01562	321	Pfam	Mitochondrial carrier protein	134	206	IPR018108	-
	Pste7g01562	321	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	224	313	IPR018108	-
	Pste7g01562	321	Gene3D	Mitochondrial carrier domain	2	123	IPR023395	-
	Pste7g01562	321	Gene3D	Mitochondrial carrier domain	129	321	IPR023395	-
	Pste7g01562	321	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	115	204	IPR018108	-
	Pste7g01562	321	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	10	100	IPR018108	-
	Pste7g01562	321	SUPERFAMILY	Mitochondrial carrier	13	309	IPR023395	-
	Pste7g01562	321	FunFam	Folate transporter 1, chloroplastic	105	319	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste7g01562	Pste-Chr7	14324351	14339726	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste7g01562	32	314	Chloroplast and Mitochondria Gene Families	AT2G47490	35.789	9.96e-41	142