Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01560 GCATTAATAGGTCTTTTCAACAAATTCGTGTGGGTCAGAGCACAATGCCATCATCGTTTACAATAGGTGCAACACATATTCTATCATCGTCCTTATTTGTACAAAAAACACTTCCCCCACTTTGTGGTAAGGTGGAAGTTAGAGGTTATGATGGTCTAAGAACTACCTCAAGAGTTAAGGAACTTGTAAAAACATTGGTGATTCACTATATTGTCATTAACGTCTTTTCCTCTTATAACATCTTGTTGAGCAAACCTACATTGAACATGTTGTATGGTGTCGTGTTCACTTTCCTTTTGAAAGTAAAATATCCATTAGAAAATGGTATTATCCACAGCTTTGTTGAACTTCTTTTATATATGCTATCAAAGATATTTGTCGTGGGATTTGATCTAAGAAACATGTGGTGCAAAAAGCAATTGTCCCCTCGTGACAAAAGAAAACGGCCCACAGGCCACGAAGAATTGAAGGGAAAGCCTCCAAAGAATTCCAACCTCACGCTTCTTCCTCTATATAAAGCTCTTGAACCGTCCCCACCTTCGAGTTTTGCAAACGCAACTGTCTTCGTGTCGTTCACTGAGAAAGCTGGTATTGATTCTTCTCCATCTTTCCATAGGCTGAATCCGTGTCGTTCACCTGCGGGTTATGGTAAAGCTCAAATCTCATCTCTCTTGGATCTGCAGAAAATGATTTTGCCGATTGAATTTTTTTCAATTAGAGCGAGAGTGCACACAAATAGTGGCGCCCCGATGGATCCGATCGCAGCTACCAACGAGCTCTATTTCCGAGTCGGGTTCACAGGCAACAGTGGCCACCTCAGGCTGGAGCCACTCTCCACTGCGGAGCGCCGCAACCCGCTCCGTTCCATTCCTGATTTCATTCCGCCACCTGCCTTTCCTAGCGAGACTCATGAATCTATAAAGAAGTACATAGAAGAGACATATCTCCAGCCAAGATTGGATCCTGATGAGTTTTCACCAGAAAAAGTTGGGAGGCAGTGGGAATTTGATTGGTTTGACAGGGCTGAAGTTCCCCTGGAGCCATCATTGCCACGAACTATGGTAGTTCCAGTTTGGGAACCACCATTTCGACGTTCAAACAATGGATCAGAGAAAGGAATCTGGGAACCAAAATTTGAGGAGGTGGGAGGTGCTTCTATGAGATTGCAAATTCCACATCGTGTGGATGTATCAGATCTGACATCAGGAGCTGTAGAATCTGGGCCATTACCACGCACTTCAGGAAAGGACTTTGTTAGGGGAAGCATCAATAATCGTCCTTTTCGTCCAGGAGGTTTGGATGATTCCCGAAGTTTGGAAAGAATTCTTCCAGAAGGTGCTTCTAATGGTGAATGGGTGCGTGAAGTTTTGAATGGTAGTCCTGCTCAGACAATTCCTCCGAGCTTAAAGCAAGGATTGGACTTTGGTGTGCTCAAGCCATATCCATATTCATGGAATGTCTGCGAGGAAGCCAGCTCACTCAATACTTCATCTGATGAAAAATTGAGTGGATTGTCCATACAGTTTGATGACTTATTTAAGAAGGCTTGGGAAGAGGATGCTGTTGGAGAACATGAAGAAGATGGTCATTTATCAGAAGTGGAGACTATATTGGAAGCTGAAGTTGGTAAGACCGAGGTATTCAGTAAAGAACATGAGAGTGAAATGTCACTTGATGATATTCTGTCAGCTGATTCAGATGGATCAAAACTGCATTTGGATGGATTTGGTGATGAAATTGGACAGCAGAAGAGGGAAGCTTGGGCTATGCATGAAACCAGTGAAAGAATTGTCAATTGCTTTCATGAACTTGTTCCTGACATGGCACTGGAGTTTCCCTTTCAATTGGATGCATTTCAGAAGGAGGCTATTTATTATCTTGAGAAGGGGGAATCTGTTTTTGTGGCTGCTCACACCTCAGCTGGAAAGACAGTAGTTGCTGAGTATGCATTTGCTTTAGCATCAAAACATTGCACTAGAGCTGTGTATACTGCTCCAATAAAAACCATCAGCAATCAGAAATACAGAGATTTATGTGGGAAGTTTGATGTTGGGCTTCTTACTGGTGATGTAAGCCTGAGGCCAGAGGCTTCTTGTCTCATTATGACCACTGAAATTTTAAGATCAATGCTGTACCGGGGTGCTGATATTATTCGAGACATTGAATGGGTTATATTTGACGAGGTGCACTATGTTAATGATGTGGAAAGAGGTGTTGTTTGGGAAGAAGTAATTATCATGCTTCCAAGACATATCAATATTGTCCTCCTTTCTGCCACGGTTCCTAATACTATTGAATTTGCTGATTGGATTGGCAGGACTAAACAAAAGGAAATAAGGGTTACGGGGACAACAAAGAGACCTGTCCCATTGGAGCACTGCCTGTTTTATTCTGGAGAACTTTACAAAATTTGTGAAAGTGAAACATTTCTGCCTCAGGGATTGAAAGCTGCTAAAGAAGCTTCAAGAAAAAGGAATTTGACAGCTGCTGGTGGTTTTGGACCAAAGTCTGGTGGTGGTGGTGGTTCTGGACCAAAGCCTGGGATTTCAACAGGTCATGACCATCCTCGAGTACAAAAACGTGAAAATTCATCCCGTGGGAAGCAACATGGAGCTAATTTCTCTGGAACTGGTAGAGGTTATCAGAATAATGGCAATGGCCAGAGCAATTGGGAACTGAGGAGAGCAGATGCGTCATTGTGGTTGATGCTTATCAACAAACTCTCCAAGAAGTCATTATTGCCTGTGGTTATATTTTGTTTCTCTAAAAATCGCTGTGATAAATCAGCTGATAGTATGACTGGAACTGACCTCACTAGTAGCTCAGAGAAAAGTGAGATCCGACTTTTCTGTGACAAAGCATTTTCGCGACTGAAGGGATCAGACAGAAATTTACCACAGGTTGTTCGAGTACAGAGTCTTCTTCGCCGAGGTATTGGTGTACATCATGCTGGCCTTCTTCCAATTGTAAAGGAAGTTGTTGAAATGCTATTTTGCCGTGGGGTTATCAAGGTCTTGTTTTCAACTGAGACATTTGCAATGGGAGTCAATGCACCTGCCAGAACGGTAGTCTTTGACACTCTAAGAAAGTTTGATGGCAAGGAATTCAGGCAGTTACTAGCAGGGGAATATACTCAAATGGCAGGTCGTGCTGGCAGAAGAGGACTTGATAAGATTGGTACTGTTATTTTGATGTGCCGTGATGAACTTCCAGAAGAGAGTGATTTAAAGCGTGTCATTGTTGGAAGTGCAACTCGACTAGAATCTCAATTTCGACTAACCTATATTATGATTCTACATCTCCTTCGAGTTGAGGAGTTAAAGGTAGAGGACATGCTTAAAAGAAGTTTTGCAGAATTCCATGCTCAGAAAAAACTTCCAGAAATGCAGCAGCTGTTGAAGCGAAAGCTTAATCAACCTACAACGGCTATTGAGTGTATAAAGGGTGAACCAACCATTGAAGAATACTATGATTTATATTCAGAAGCTGAGACATACAGCAACCAGATATCAGAGGCAATTTTGCAGTCCCCCAATGCCCAACAATTTCTTAATACTGGAAGAGTTGTAATTGTAAAATCAGAATCAGTACAGGACCACTTGCTTGGGGTGGTTGTGAAAACTCCTTCTCCAAATAATAAGATGTACGTTGTTTTTGTGATTAAACCAGACATGCCGTCCTCAGTGGACAATGCCTCAAGTAATGTGCAGAATAAAAGTGGAGCATTTGATCAAGGTTATTTTGTAATGCCAAAATCAAGACGCGGTCTTGTAGATGAATATAGTACATCTGTTTCTGCCCGCAAAGGAAGAGGACTCATCAACATTAAATTGCCCCATTGTGGTTCCGCCTGTGGAATGAGCTATGAAGTCCGAGAAGTTGACAGTAAAGAGTTTCTGTGCATATGCAGTAAAAAACTTAAAATTGACCAATATGGACTTCTTGAAGATGTTAGCATTTCTATTTATTCAAAGACTGTTCAGATGCTCGTGAATTTGAAATCAGATGGAAATAAGTATCCTCCAGCTTTAGATCCTGTGAAAGATCTAAAGTTGAGAGATGTGAAACTTGTGGCAACATATCATAAGTGGACTAGATTATTGGAGAAGATGTCCCAGAATCAGTGTCATGGGTGTATAAAATTGGAAGAACACCTCAAATTGGCGAAAGAGATAAAAAAACACAAAGAAGAAGTCTATGCTCTTCAGTTCCAAATGTCCGATGAAGCACTTAAACAGATGCCTGATTTTCAGGGCCGGATAGATGTTCTGAAGGAAATTGGATGCATTGATGAGGACCTTGTTGTTCAAATGAAAGGTCGTGTTGCATGTGAGATGAATTCTGGGGAGGAACTGATATGTACTGAATGCCTGTTTGAGAACCAAATGGATGAACTGGAACCAGAAGAAGCAGTGGCGATAATGTCAGCGTTTGTGTTCCAGCAGAAGAATACGTCTGAGCCTTCGCTCACACCCAAGCTATCCGAAGCAAGGCACAGATTGTACAAAACAGCTACAAGACTTGGAGAGCTCCAAGCTCGATTTAATCTACCCATAAACCCTGCAGAGTATGCCCAAGAAAATCTCAAGTTTGGTCTCGTTGAAGTGGTTTATGAATGGGCAAAGGGTACTCCATTTGCTGACATATGTGAGCTTACTGATGTTCCTGAAGGCTTGATAGTAAGGACCATTGTGAGGTTGGACGAGACATGTCGGGAGTTCAAAAATGCTGCAGCTATTATGGGTAATTCTGCTCTCTGCAAAAAAATGGAAATTGCTTCAAATGCAATAAAGCGTGACATTGTATTTGCAGCTAGCTTGAATGATACATCAAATGGCTGCATGGAACCTTGCATTTACACATTGCACTCTCTCGCTATTTTCTCTCATGCAAGCAAACGTTTCTTTGCCAATGCCAATGCCATTGCCAATGCTCATTTAACTCTATCTGTCCTTCTCTTTTCTCTTTTCTCTCACACCACCCTTCAAGCCATGGAACCAAACTGGAGCACTCGCCAAACGTTTGAACGTTACCTTTATGATTATCTTGTCAAAAGAAACATGCACCACACTGCCGAGGTTTTCAGGAATGAGACTAATCTTCTGCTGGATCCCGGTGCTGCTTCACCAATTGATGCAATGGATGTACCAGAAGGATTTTTGCTAGAGTGGTGGTCGCTCAACTATGATCTTGACTGCTTTAAAGCATGGCTACAAATGCGTGATTCACATGCCATACAAGGATGTTATGCTTCTCAAGAAGCAGGGTATTCCATGAATGTAGAAAAAATGAATCAATTGCCTGATAATTTTACTCCTGCTGAAGCATTCAGTAAGGGGTGCACCTCAATGCCATCACATGTAATTAAGGAATTTCCATTAGTTTCCTCATCACCTTCACAACGAGAAGTAAGTGGTGAATTGTTACAGTTTCTCCTCCTATCTCTAGAGGTAAGTGGTGAATTGCCACAACTTCTATTACCATTGCCAAATCAAGAGGAACTATTGACATTAACAAAGAGAGCAATTGTTGTGGCCAATGCAAATGGTCCTAAGGCAAAACCTGAATATACAGGATTTAGTGAGAAACCAGATCCAGTGCTTGATAATTTAATAAACTCATTCTGGTTGGTTGAAGATCAGCCTAGACTACGTGATAAATCAATTGCTGGAGAGAGCAGTAGAAATGTGGAGAATTTAGTGGCATGTGGACAAGGAAACTCTGGTATGAATGAACTAGCTGGTTCACCACCAGAATCGACTCAATCGAGGGATGATCATAACAGCAGTGAAACAAGTGATGGTTCCAGCTATTTTCGAATAATTACAGCAGATGAAGATTCTTTGATGGTATCTTTTAGCATGGAATGTGATCTGTTGTCTGAAATAATGAATTCCCTTGAGCAATTGTCGGAAGCAGAGGTGTCCAAGCTAATTTATGGTGGACAACCAGCAGGGAAAAAAACATTTGAGCAAATTTTTCAGCAGAAAAGAAAATGGCAAGTGTTCAAGCTCCTGATCTCTCTCCAAGAGAAGGAAACAAAAGAAAATAGATTATCCCTGGTATTAAGAGAAGATCTAACATGGGTTAGAAGGCATACAAGGATATCATATAATCTTTCTCAAGAAGCAGGGTGTTCGATGAATGGAGAAGCACAGAATCAGGGGCCTAATAATTTTACTCCTGCAATGGATGTTAGCAGAGGGATTTTTGCTGGAGTGGTGGTTGCCCAGCTA 6236 0.416 MPSSFTIGATHILSSSLFVQKTLPPLCGKVEVRGYDGLRTTSRVKELVKTLVIHYIVINVFSSYNILLSKPTLNMLYGVVFTFLLKVKYPLENGIIHSFVELLLYMLSKIFVVGFDLRNMWCKKQLSPRDKRKRPTGHEELKGKPPKNSNLTLLPLYKALEPSPPSSFANATVFVSFTEKAGIDSSPSFHRLNPCRSPAGYGKAQISSLLDLQKMILPIEFFSIRARVHTNSGAPMDPIAATNELYFRVGFTGNSGHLRLEPLSTAERRNPLRSIPDFIPPPAFPSETHESIKKYIEETYLQPRLDPDEFSPEKVGRQWEFDWFDRAEVPLEPSLPRTMVVPVWEPPFRRSNNGSEKGIWEPKFEEVGGASMRLQIPHRVDVSDLTSGAVESGPLPRTSGKDFVRGSINNRPFRPGGLDDSRSLERILPEGASNGEWVREVLNGSPAQTIPPSLKQGLDFGVLKPYPYSWNVCEEASSLNTSSDEKLSGLSIQFDDLFKKAWEEDAVGEHEEDGHLSEVETILEAEVGKTEVFSKEHESEMSLDDILSADSDGSKLHLDGFGDEIGQQKREAWAMHETSERIVNCFHELVPDMALEFPFQLDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDLCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELYKICESETFLPQGLKAAKEASRKRNLTAAGGFGPKSGGGGGSGPKPGISTGHDHPRVQKRENSSRGKQHGANFSGTGRGYQNNGNGQSNWELRRADASLWLMLINKLSKKSLLPVVIFCFSKNRCDKSADSMTGTDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLAGEYTQMAGRAGRRGLDKIGTVILMCRDELPEESDLKRVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEMQQLLKRKLNQPTTAIECIKGEPTIEEYYDLYSEAETYSNQISEAILQSPNAQQFLNTGRVVIVKSESVQDHLLGVVVKTPSPNNKMYVVFVIKPDMPSSVDNASSNVQNKSGAFDQGYFVMPKSRRGLVDEYSTSVSARKGRGLINIKLPHCGSACGMSYEVREVDSKEFLCICSKKLKIDQYGLLEDVSISIYSKTVQMLVNLKSDGNKYPPALDPVKDLKLRDVKLVATYHKWTRLLEKMSQNQCHGCIKLEEHLKLAKEIKKHKEEVYALQFQMSDEALKQMPDFQGRIDVLKEIGCIDEDLVVQMKGRVACEMNSGEELICTECLFENQMDELEPEEAVAIMSAFVFQQKNTSEPSLTPKLSEARHRLYKTATRLGELQARFNLPINPAEYAQENLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALCKKMEIASNAIKRDIVFAASLNDTSNGCMEPCIYTLHSLAIFSHASKRFFANANAIANAHLTLSVLLFSLFSHTTLQAMEPNWSTRQTFERYLYDYLVKRNMHHTAEVFRNETNLLLDPGAASPIDAMDVPEGFLLEWWSLNYDLDCFKAWLQMRDSHAIQGCYASQEAGYSMNVEKMNQLPDNFTPAEAFSKGCTSMPSHVIKEFPLVSSSPSQREVSGELLQFLLLSLEVSGELPQLLLPLPNQEELLTLTKRAIVVANANGPKAKPEYTGFSEKPDPVLDNLINSFWLVEDQPRLRDKSIAGESSRNVENLVACGQGNSGMNELAGSPPESTQSRDDHNSSETSDGSSYFRIITADEDSLMVSFSMECDLLSEIMNSLEQLSEAEVSKLIYGGQPAGKKTFEQIFQQKRKWQVFKLLISLQEKETKENRLSLVLREDLTWVRRHTRISYNLSQEAGCSMNGEAQNQGPNNFTPAMDVSRGIFAGVVVAQL 2064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01560 2064 Pfam rRNA-processing arch domain 1095 1393 IPR025696 -
Pste7g01560 2064 Gene3D - 564 772 IPR027417 -
Pste7g01560 2064 Pfam Ski2 N-terminal region 314 466 IPR040801 -
Pste7g01560 2064 FunFam ATP-dependent RNA helicase SKI2 564 772 - -
Pste7g01560 2064 MobiDBLite consensus disorder prediction 385 422 - -
Pste7g01560 2064 MobiDBLite consensus disorder prediction 853 872 - -
Pste7g01560 2064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 1054 IPR027417 -
Pste7g01560 2064 SMART Lish 1656 1688 IPR006594 GO:0005515
Pste7g01560 2064 CDD SF2_C_Ski2 889 1052 - -
Pste7g01560 2064 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 380 1578 - -
Pste7g01560 2064 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 609 764 IPR014001 -
Pste7g01560 2064 Pfam DEAD/DEAH box helicase 604 750 IPR011545 GO:0003676|GO:0005524
Pste7g01560 2064 Pfam DSHCT (NUC185) domain 1420 1589 IPR012961 -
Pste7g01560 2064 ProSiteProfiles LIS1 homology (LisH) motif profile. 1656 1688 IPR006594 GO:0005515
Pste7g01560 2064 Pfam LisH 1664 1684 IPR006594 GO:0005515
Pste7g01560 2064 MobiDBLite consensus disorder prediction 1891 1922 - -
Pste7g01560 2064 Gene3D - 773 1073 IPR027417 -
Pste7g01560 2064 SMART DSHCT_2 1416 1594 IPR012961 -
Pste7g01560 2064 FunFam DExH-box ATP-dependent RNA helicase DExH11 773 1073 - -
Pste7g01560 2064 MobiDBLite consensus disorder prediction 838 852 - -
Pste7g01560 2064 FunFam Ski2 ATP-dependent RNA helicase 1369 1593 - -
Pste7g01560 2064 SMART ultradead3 597 777 IPR014001 -
Pste7g01560 2064 MobiDBLite consensus disorder prediction 128 149 - -
Pste7g01560 2064 SMART helicmild6 954 1040 IPR001650 -
Pste7g01560 2064 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 889 1087 IPR001650 -
Pste7g01560 2064 FunFam DExH-box ATP-dependent RNA helicase DExH11 1074 1141 - -
Pste7g01560 2064 Gene3D - 1373 1593 - -
Pste7g01560 2064 Gene3D - 1074 1141 - -
Pste7g01560 2064 MobiDBLite consensus disorder prediction 813 872 - -
Pste7g01560 2064 MobiDBLite consensus disorder prediction 1891 1908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01560 Pste-Chr7 14268936 14325774 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pste7g01560 rRNA_proc-arch 1.7e-44 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01560 7 14268936 14325774 Pste7g01560 7 14268936 14325774 ECH