Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01511 ATGTCATTGAGAAGTATAGTTCATGAATTCAAGGAAATGAGAGAGGGAATAGGCAGCACATCAAAGTCGGGTGCAGAAAGCAAGCGTCGGCTTAGTCGGACATTGTCACATGTAGCTCCAGATGTTCTTGCAACTCCATTTGAGTCTATTCAACAGGGACAATGGGCAAATCTACCACAAGAATTGCTTTCGGACATAATCCAGAGGCTTGAAGAGAGTGAGACATCATGGCCTGCCCGTGCTGTTGTTGTCTTTTGTGCGTCTGTATGTAAATCATGGAGGTCTATTACAAAAGAGATTGTCAAGACCCCTGAACAATGTGGAAGGATCACATTTCCTATTTCATTAAAGCAGCCTGGTCCGCATGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATCTATTGTACTTTGGTTTGGTTCCATCAGATAATGAGAACAACAAGTTGTTATTAGCTGCCAAAAGGATGAGAAGGGCAACAGGAACTGATTTTGTCATATCCTTGGCTGCAGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTGAGGCAAGTTTTTGTTGTACAGAAACTTAACCTTTTTTTCAATTTTCACTTTGCCTTATCATCCTCCCTACAACTTGATGTTGCACTTTTGCCAGGTCTAATTTTTTGGGTGACGCCAAGAGTTCTAGCCTGTAGCTATCTTGTTACCACTGTTTCCTACGAGCTGAATGTCCTCTGCACTAGAGGACCTCGAAGAATGCATTGTGTCATGAACTGTATACCTGTCTCCGCTATTCAAGAAGGGGGAAACGTCCCAACTCCCACATCTTTCCCTCAAATATATGAACCTTTTTATCCATCACCAGCCCCAAAAGAAAAAGTTTCAGTCACAGATTTAAACTCTGCAAGCTTATCAGAACCACCAATATTGAGTCAAGGCTCAACTGAGCAATTAGTACTGAAAAACAAAGCTCCCAGATGGCATGAGCAACTACAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTTTCAGTGGCTTCTGTTAAGAACTTTCAACTTGTAGCTGCTGCTGTCGATCCATATCATAACATTTCTGCTGAGGAACAAGAAAAGGTCATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTCACCATGGATTACCGATATCCACTCTCTACCTTCCAAGCCTTTGCCATCTGCTTGAGTAGCTTTGACACTAAACCAGCCTGTGAATAA 1245 0.4201 MSLRSIVHEFKEMREGIGSTSKSGAESKRRLSRTLSHVAPDVLATPFESIQQGQWANLPQELLSDIIQRLEESETSWPARAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPHDSPIQCFIRRNRETSTYLLYFGLVPSDNENNKLLLAAKRMRRATGTDFVISLAADDFSRASNKYVGKLRQVFVVQKLNLFFNFHFALSSSLQLDVALLPGLIFWVTPRVLACSYLVTTVSYELNVLCTRGPRRMHCVMNCIPVSAIQEGGNVPTPTSFPQIYEPFYPSPAPKEKVSVTDLNSASLSEPPILSQGSTEQLVLKNKAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAAAVDPYHNISAEEQEKVILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01511 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Pste7g01511 414 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Pste7g01511 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Pste7g01511 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Pste7g01511 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Pste7g01511 414 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Pste7g01511 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Pste7g01511 414 Pfam Tub family 116 409 IPR000007 -
Pste7g01511 414 CDD F-box_AtTLP-like 55 99 - -
Pste7g01511 414 Gene3D - 48 101 - -
Pste7g01511 414 PANTHER TUBBY-RELATED 48 412 - -
Pste7g01511 414 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Pste7g01511 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Pste7g01511 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Pste7g01511 414 SUPERFAMILY F-box domain 51 98 IPR036047 GO:0005515
Pste7g01511 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Pste7g01511 414 Pfam F-box domain 55 102 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01511 Pste-Chr7 13845841 13847725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01511 1 414 TUB Transcription Factor Family AT2G18280 58.612 2.79e-168 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pste7g01511 Tub 3.8e-88 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01511 7 13845841 13847725 Pste7g01511 7 13845841 13847725 ECH
Pste7g01511 7 13845841 13847725 Pste1g02806 1 11760752 11762882 ECH
Pste1g02806 1 11760752 11762882 Pste7g01511 7 13845841 13847725 PCT