LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste7g01451	ATGTCTTCCCCTCGTAACAAAATCCCCGATGACGCCACACCTGATAATGCCACTCCCGACAACGCCACTCCCGATGCTGCTCCACATAATAAAACCCCCGACAACTCCACACCTGATAACGCCACTCCCGACAAGTCCACACACGACGCTGCTCCACATAACAGAACCCCCGATAACGCCACACCCGATAATACCACTCCCGACAATAGTACCCCCGATGATGCCACTCCTAATAACTCTAGGGCATCGCACAAAGGTTCTTCTTCCTCGTCCATGCTCGGGAAGGACAATAGTTCGTCAAACAAATCTTTATCCGACGGAAAGTCTTCTAACGATGACACCGTCAATAAAGCAGCACTGGGAGCTGGCATTGGCGTCGGCTTCGTTCTTCTTGTGCTTTTCATTGTTTGTTGCGTTTGGTGTTGTAGGAGGAAGAAACGCAAGCAAAAGCAAAACTACTATTACGCAAATCCTCCTAACGGAAAAGCACCAAGTAACTATTATAATAGTGGGCAGCACCCTCTCCCTAGTTGGCAACAAGCAGGTCCAGGACCTCATGGGGGTGACCATGTTATGAGGGTACAACAACAAGGAATGGGGATGGGAATGGGCATGGGAATGGGAATGGGAATGGGTCCTCCTAGTGGTGGCTGGGGTCCACCACAACCTGCAATGAACAGTGGTGAAATGAGCAGCTCCAATTACTCATCAATCGGAATGGGTGCTTCCCCGCCAGGCCTATCTCTCACACTTAACGGTGGTACCTTCACTTATGAGGAACTAGCAGCTGCCACTAAAGGATTTGCTAGTGAGAACATTATAGGACAAGGTGGCTTTGGTTATGTCCATAAGGGAATTTTGCCTAGTGGAAAGGAAGTGGCTGTTAAGAGTCTTAAAGCAGGTAGTGGGCAAGGAGAACGTGAGTTCCAAGCCGAGATTGACATCATTAGTCGCGTTCATCATCGTCATCTTGTGTCGCTTGTTGGATATTGCATTAGTGGAGGGCAAAGAATGTTGGTCTATGAATTTGTTGCTAACTCAACTTTGGAACATCACCTTCATGGAAAGGGCGTGCCTACCATGGATTGGCCTTCCAGAATGCGAATTGCACTTGGATCAGCCAAAGGGCTTGCCTACCTTCATGAAGATTGTAGTCCTCGCATTATTCATCGTGATATTAAAGCTTCCAATGTCCTTCTTGATAACAGCTTCGAAGCAAAGGTGTCCGATTTTGGATTGGCTAAGTTGACGACGGATAATAATACACATGTCTCAACTCGGGTCATGGGAACATTCGGGTATCTAGCCCCAGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGATGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACCGGAAAACGACCTGTAGATTTGACAAACACCATGGAAGATAGTTTAGTGGATTGGGCTCGACCACTTCTGAATAAAGGGTTGGAGGATGGCAACTTTGGAGAGTTAGTGGATCGATTTTTGGAAGGCAAATACAATAACCAGGAAATGACAAGAATTGCAGCTTGCGCTGCAGCAAGCATTCGTCATTCAGCTAAGAAGCGTCCAAAAATGAGTCAGATTGTAAGAGCACTGGAAGGAGATGTCTCATTAGAAGACTTGAAAACTGGAATGAAGCTTGGGAATGGAACTGGGAATAATAATGCTTACACTTCTTCATCTGGGAGCTCAGAATATGATACAATGCAATATAATGCTGATATGACAAAGTTCAGACAGGCAATAATGTCAAGCACAGAATTTTCTGACAGCGGTGAGATTACTAGTAAGGAGATGGGTAAGCATTAA	1833	0.4583	MSSPRNKIPDDATPDNATPDNATPDAAPHNKTPDNSTPDNATPDKSTHDAAPHNRTPDNATPDNTTPDNSTPDDATPNNSRASHKGSSSSSMLGKDNSSSNKSLSDGKSSNDDTVNKAALGAGIGVGFVLLVLFIVCCVWCCRRKKRKQKQNYYYANPPNGKAPSNYYNSGQHPLPSWQQAGPGPHGGDHVMRVQQQGMGMGMGMGMGMGMGPPSGGWGPPQPAMNSGEMSSSNYSSIGMGASPPGLSLTLNGGTFTYEELAAATKGFASENIIGQGGFGYVHKGILPSGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYCISGGQRMLVYEFVANSTLEHHLHGKGVPTMDWPSRMRIALGSAKGLAYLHEDCSPRIIHRDIKASNVLLDNSFEAKVSDFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDLTNTMEDSLVDWARPLLNKGLEDGNFGELVDRFLEGKYNNQEMTRIAACAAASIRHSAKKRPKMSQIVRALEGDVSLEDLKTGMKLGNGTGNNNAYTSSSGSSEYDTMQYNADMTKFRQAIMSSTEFSDSGEITSKEMGKH	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste7g01451	610	SUPERFAMILY	Protein kinase-like (PK-like)	250	540	IPR011009	-
	Pste7g01451	610	ProSiteProfiles	Protein kinase domain profile.	268	528	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste7g01451	610	MobiDBLite	consensus disorder prediction	53	112	-	-
	Pste7g01451	610	MobiDBLite	consensus disorder prediction	16	44	-	-
	Pste7g01451	610	Gene3D	Transferase(Phosphotransferase) domain 1	344	553	-	-
	Pste7g01451	610	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	388	400	IPR008271	GO:0004672\|GO:0006468
	Pste7g01451	610	SMART	serkin_6	268	528	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste7g01451	610	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	128	589	IPR047117	-
	Pste7g01451	610	MobiDBLite	consensus disorder prediction	1	112	-	-
	Pste7g01451	610	ProSitePatterns	Protein kinases ATP-binding region signature.	274	296	IPR017441	GO:0005524
	Pste7g01451	610	Pfam	Protein tyrosine and serine/threonine kinase	271	540	IPR001245	GO:0004672\|GO:0006468
	Pste7g01451	610	FunFam	proline-rich receptor-like protein kinase PERK1	246	343	-	-
	Pste7g01451	610	FunFam	Proline-rich receptor-like protein kinase PERK1	344	551	-	-
	Pste7g01451	610	Gene3D	Phosphorylase Kinase; domain 1	247	343	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste7g01451	Pste-Chr7	13299562	13304437	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste7g01451	122	600	Trihelix Transcription Factor Family	AT1G70460	51.240	1.22e-155	462

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Pste7g01451		PK_Tyr_Ser-Thr	8.4e-48	CL0016