Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01403 ATGAACCCTGTTGATTGGGAACAGGAACTGAAAAAGTATGAGGATGTTATAGCTTCAGGTACAAAGTGTATGAAAATAAAAGCCATGGTGATGCTGGCACGGTCCTCTAAGCATGCCCCTGAGCATGTTTTAGCTCGCACCATACCCATTCTGACTGAGATTCTTGGTCGCAATGTTTCAAATGATTCTGCCTCTTCACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGCATTGCTTGCAGGGGTGATGGTGGCTTGGCCGTTAAAATCGGTCAACATGGAGCCACTCATTCTTTGATGAGGTTGTTGCCTCAATCTGATGGGAGGATGCAGAAGGTCCTGATAAAATGTATGCTGGTTATTGTAAGTTTTTGCAATGCAAGTAGGACAGTTGTTGCCAGCAACAGTGGGGTGGAAATGATCATTGGTTTGTTGAGTTCTTGCACCAATGATACTAGACAGTATTTGTTGGAGATTTTGAGTGCGTTGGCAATGAGGAGGGATATTAGGAAGGCTCTCACTAGACTAAGGGCTCTTCATTATGTTGTGGAGGCTGCTGGTTTTGGTAGCATGGTGTCTAGGGAAAGGGCTTGTCAAGCAATTGGGTTGCTTGGAGTCACAAGACAGGCTAGACGCACGCTTGTTGAGTTGGGAGCGATACCGGTGCTTGTGGCGTTGTTTCGTGAAGGAGATCACACTGCAAAGCTTGTAGCTGGTAATTCTCTTGGTGTGATATCTGCTCATGTTGATTATATTAGGCCAGTGGCTCAAGCTGGGGCTATCCCTCTTTATGCGGAACTTCTTGAAGGGCCTGATCCTTCTGGGAGGGAGATAGCTGAGGATGTGTTTTGCATATTGGCTGTAGCAGAGGCTAATGCAGTTGAAATTGCAGGGCACTTGGTGAGGATTCTGAGAGAAGGTGATGATGAAGCTAAGGCTTCTGCAGCTGATGTGATGTGGGATTTGTCTGGTTACAAGCACTCAATGTCTGTAGTCCAGGATTCAGGTGCAATTCCTATTCTTGTTGAGCTTTTGGGGAGTGGAAGTGAAGATGTAAAGGTGAATGTTTCTGGGGCATTTGCTCAACTAAGCTATGATGGAATAGATAGAATGGTGCTTGCTGAGGCAGGGGCAATTCCGATTCTCGTTGACTTGATGAATGATGCTGATGAGGTTGAGGAACTAAGGGATAATGCTGCAGAGGCTCTTGTCAATTTTTATGTAGATCCGTTATATCATGATAGAGTTTCTGATGCGGTTAATGTTCCTTTGTTCAGAAATATGCAGAATAGATTAATTCATATTCGTGCTTCGAATGAGCACATGGCTAGATCCTTGAGAAGAATGAGTGTTGAGCAACTCACTTGGAACTCAGATCTTGAATAA 1386 0.4459 MNPVDWEQELKKYEDVIASGTKCMKIKAMVMLARSSKHAPEHVLARTIPILTEILGRNVSNDSASSLQEAAAYCLKCIACRGDGGLAVKIGQHGATHSLMRLLPQSDGRMQKVLIKCMLVIVSFCNASRTVVASNSGVEMIIGLLSSCTNDTRQYLLEILSALAMRRDIRKALTRLRALHYVVEAAGFGSMVSRERACQAIGLLGVTRQARRTLVELGAIPVLVALFREGDHTAKLVAGNSLGVISAHVDYIRPVAQAGAIPLYAELLEGPDPSGREIAEDVFCILAVAEANAVEIAGHLVRILREGDDEAKASAADVMWDLSGYKHSMSVVQDSGAIPILVELLGSGSEDVKVNVSGAFAQLSYDGIDRMVLAEAGAIPILVDLMNDADEVEELRDNAAEALVNFYVDPLYHDRVSDAVNVPLFRNMQNRLIHIRASNEHMARSLRRMSVEQLTWNSDLE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01403 461 Coils Coil 382 405 - -
Pste7g01403 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Pste7g01403 461 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 300 419 - -
Pste7g01403 461 Gene3D - 249 430 IPR011989 -
Pste7g01403 461 SMART arm_5 366 408 IPR000225 GO:0005515
Pste7g01403 461 SMART arm_5 248 288 IPR000225 GO:0005515
Pste7g01403 461 SMART arm_5 35 80 IPR000225 GO:0005515
Pste7g01403 461 SMART arm_5 325 365 IPR000225 GO:0005515
Pste7g01403 461 SMART arm_5 207 247 IPR000225 GO:0005515
Pste7g01403 461 SUPERFAMILY ARM repeat 47 407 IPR016024 -
Pste7g01403 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 406 IPR000225 GO:0005515
Pste7g01403 461 Pfam Armadillo/beta-catenin-like repeat 370 405 IPR000225 GO:0005515
Pste7g01403 461 Pfam Armadillo/beta-catenin-like repeat 331 364 IPR000225 GO:0005515
Pste7g01403 461 Gene3D - 8 248 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01403 286 408 U-box Gene Family AT3G46510 28.455 1.16e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01403 7 12777978 12779363 Pste7g01403 7 12777978 12779363 ECH