Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01400 ATGACTTATCAAGTCATTAATTCCATCCTATGGTGCTTTATTTTAGTTATTATAAGCATTACCATTTTCACTCCAAAACTTTGTTTTGCCACTAAACAAGTCAAGATTGAAAGTTTGGTAATGAATCAGATTGATCAATGTTGGAGATTTAATCCTGAATGGAGAAAACACCGTTCAAAACTTGCCACATGTTCAGTGGGTTATGCAGGGAAGATGACAAACAACATTGGTAAAGACCTTATTCTTTATAAAGTTACCGATCCTAACGACAACCCAATAAACCCCAAATTTGGCACTTTGAGATATGGAGCTTCAAGGATTCAAGGTAAAGTTTGGATTACCTTTCAAGGAGACATGCATATTAGGCTTGAGAAACCTCTTCTCATTAGCAGTTTCACCACTATCGATGGTCGAGGTGTTAATATCCACATTGCTAACAATGCATGCTTGATGATCTTTAAGGCAACCAATGTAATAATCCACGGCCTTAGAATTCATCATTGTCAACCTCAAGCTCCAGGAATGGTAATGGGTCCTAATGGAAAAGCGATACATTTGGGTCAAGTTGATGGAGATGCAATAAGATTGGTTACAGCTTCAAAGATTTGGATTGATCACAACACACTTTATGATTGTCAAGATGGTCTTCTTGATGTAACACGAGGCTCCACTAATGTGACTGTCTCAAACAATTGGTTTAGGGAACAAGACAAAGTTATGCTTCTTGGACATGATGACGGGTATGTGAGAGATAAAGACATGAAGGTTACTATTGTGTATAACTATTTTGGACCTAATTGCCACCAGCGTATGCCAAGAATTCGCCATGGCTATGCACATGTTGCGAACAATCTCTACATGGGATGGGTACAATATGCCATAGGTGGAAGCATGGAACCTAGCCTTAAAAGTGAATCAAACCTCTTCATAGCACCATCGTCAGGGCATAAAGAGGTAATTTGTTCAAGCAATTAA 975 0.3846 MTYQVINSILWCFILVIISITIFTPKLCFATKQVKIESLVMNQIDQCWRFNPEWRKHRSKLATCSVGYAGKMTNNIGKDLILYKVTDPNDNPINPKFGTLRYGASRIQGKVWITFQGDMHIRLEKPLLISSFTTIDGRGVNIHIANNACLMIFKATNVIIHGLRIHHCQPQAPGMVMGPNGKAIHLGQVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTNVTVSNNWFREQDKVMLLGHDDGYVRDKDMKVTIVYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSESNLFIAPSSGHKEVICSSN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01400 324 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Pste7g01400 324 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Pste7g01400 324 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Pste7g01400 324 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Pste7g01400 324 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Pste7g01400 324 PANTHER PECTATE LYASE 18-RELATED 38 320 IPR045032 GO:0030570
Pste7g01400 324 Gene3D - 41 324 IPR012334 -
Pste7g01400 324 Pfam Pectate lyase 129 309 IPR002022 -
Pste7g01400 324 SMART amb_all 118 315 IPR002022 -
Pste7g01400 324 SUPERFAMILY Pectin lyase-like 35 322 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01400 Pste-Chr7 12754222 12755465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01400 72 320 Polysaccharide Lyase AT5G09280 71.486 1.27e-140 398