Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01377 ATGGATTGGCATCAGAGCGCAAAACCATTCCTTCCTCTGCCTGAGCCCTCCTTAAGCTTCTTCTACAACTATAACAACCACCCCTATCCAGCACAAACACAAACAGAGTTGATGGAGACAGGAGAATGGCTGGTTCCAGCAATGGACGACTACCGAAACAAAAACAAGAAGAGATTAAAAAGAGACCAGATAGAAGTATTGGAGATGAGTTTTGTGGAGAAGATGAAGTTGGACCCTGAAAGGAAGAAGCAGCTTTCGAGGGAGCTAGGTCTTGAGCCTCGCCAGGTTGCTGTTTGGTTCCAAAATAGGCGTACAAGGTGGAAGACCAAGCAGATTGAGCATTCTTACTGTTCCCTTAAACATCAATATGATGTCATCTTAAAGGAAAATCAGAAGCTTCAAGAAGAGGTTATGAAATTGAAGGCAATGCTAAGTCTTGAGCTAGGTTTTGAGATGCATCTACTTGGCGGTTATACAGAAATAGGTGGAGAAGAAATAGTTGAGCAGGTTGTAGATCAGAGCTTTTGTTCTGTCACTGAGGAGGATTGTAACACAGTTTCGTTACCTCATTGCCACTGGTCTGTTGCCCCTTATTAG 597 0.4338 MDWHQSAKPFLPLPEPSLSFFYNYNNHPYPAQTQTELMETGEWLVPAMDDYRNKNKKRLKRDQIEVLEMSFVEKMKLDPERKKQLSRELGLEPRQVAVWFQNRRTRWKTKQIEHSYCSLKHQYDVILKENQKLQEEVMKLKAMLSLELGFEMHLLGGYTEIGGEEIVEQVVDQSFCSVTEEDCNTVSLPHCHWSVAPY 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01377 198 SMART HOX_1 52 114 IPR001356 GO:0003677
Pste7g01377 198 Coils Coil 123 143 - -
Pste7g01377 198 CDD homeodomain 54 111 IPR001356 GO:0003677
Pste7g01377 198 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Pste7g01377 198 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Pste7g01377 198 Gene3D - 49 117 - -
Pste7g01377 198 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Pste7g01377 198 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Pste7g01377 198 Pfam Homeodomain 54 108 IPR001356 GO:0003677
Pste7g01377 198 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 145 IPR045224 GO:0003700
Pste7g01377 198 Pfam Homeobox associated leucine zipper 110 144 IPR003106 GO:0006355|GO:0043565
Pste7g01377 198 SUPERFAMILY Homeodomain-like 44 112 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01377 Pste-Chr7 12461528 12463743 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01377 1 140 Homeobox Transcription Factor Family AT5G03790 43.210 9.02e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste7g01377 Homeodomain 5.5e-17 CL0123