Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g01082 ATGTCTAGAAAGAAGGTCGACCTTACATACATAACCAAGGCCTCAAAGAGGAAGACAACATTCAAGAAAAGAAAAAATGGTTTGATAAAAAAGATTGATGAACTCACTACTCTTTGTGGAATTGAAGCATTTGCTATAATTTATTCTCCAGATGAACCTCAACCAGAGGTTTGGCCATCTGAGAGTGGAATCCAGAGTGTGATCTCAAGGTTTAGGGGAGTGCCTGAGTTGGAGCAAAGCAAAAAAATGTTGAATCAAGAGAGCTTTTTGAGGAAGGCAATAATGAAGGGCCTGGAGCAGCTGAAGAAATTGAGGAATGAAAATAGGAAGAGAGAAATGACCCTTCTCATGTTTCAACACCTCAATCAAGGGATCAACCTTGGCAATCTCAACATCATTGATTTCAATGATATCATGTACTTAATCAATCAAAGCTTGGATGATATCATAGTCAAAATTAATATGCGCCAAGGCCAAGAGGTGACACCTGTTGTTGGAAATGGAGGAGAAAGTACTATGCCTCAAGGAGAGCAAGTGTTTGTGAATTATGTCCCAATGCCTCACATTAATGTTGATGTCATGCAAAATCTGAATTGGGATGGGAGCATCAACACTCATGTTGGTGGTGGTGGTGGAAGCATCAACACTCATGTTGGTGGTGGTGGAGATAACATGTTAACATTGGAAGATGTTAATGTTCAAAGTGGTTGGCTTAACCATTTTATCCCTTGA 732 0.3975 MSRKKVDLTYITKASKRKTTFKKRKNGLIKKIDELTTLCGIEAFAIIYSPDEPQPEVWPSESGIQSVISRFRGVPELEQSKKMLNQESFLRKAIMKGLEQLKKLRNENRKREMTLLMFQHLNQGINLGNLNIIDFNDIMYLINQSLDDIIVKINMRQGQEVTPVVGNGGESTMPQGEQVFVNYVPMPHINVDVMQNLNWDGSINTHVGGGGGSINTHVGGGGDNMLTLEDVNVQSGWLNHFIP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g01082 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste7g01082 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste7g01082 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste7g01082 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste7g01082 243 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Pste7g01082 243 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pste7g01082 243 PANTHER MADS BOX PROTEIN 3 103 - -
Pste7g01082 243 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Pste7g01082 243 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pste7g01082 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Pste7g01082 243 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g01082 Pste-Chr7 9929259 9930154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g01082 1 155 Type I MADS-box Gene Family AT5G48670 53.548 4.77e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste7g01082 SRF-TF 4.4e-16 No_clan