Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00984 ATGTCACGCACTGATACGATGACGACGACTTCGGATCTTAATAGAACTGGTCCAGTTGAAAGAGACATTGAGCAGGCTATTACTGCTTTAAAAAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGAGGAAAGCCCAAGTTTTGTCCCTTTCGGCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGAAAAGATGAGAAGCGCCTTAAACTAACTAATGTTTCTAGGATTATATCTGGACAACGCACACCCATCTTTCAAAGATATCCTCGGCCTGAGAAGGAATACCAGTCGTTTTCTCTCATTTACAATGATAGATCATTAGACTTGATTTGTAAGGATAAAGATGAAGCCGAGGTTTGGTTCAGTGGGTTGAAAGCATTGATTTCACGCAGCCATCACCGGAAGTGGAGACCAGAGTCAAGAAGTGATGGTATTCCATCTGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTGAATTCTCCATTTGGTAGTAATGACAGTTTGCAAAAGGATAGTGGGGATCATCTTCGCCTTCATAGTCCATATGAAAGCCCGCCTAAGAATGGTTTGGATAAAGCATTTTCTGATGTGGTTTATTATCCTATTCCTCCCATGGGTTTCTTCCCTCCAGATTCTGCCAGTGGTTCAATCAACTCTGTGTCATCAGGAGGATCAGATAGCATGCATGGTCAAATGAAGACAATGCCCATGGATGCTTTTAGAGTCAGTTTATCAAGTGCTGTTAGTTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTGGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTACTGGGTGCTGGGGCTAACCAAGTTGGGAGTAACTTTGGTGTTAAAGTGGATTCTCTGTTGCCCAAAGCCTTGGAATCGGCTGTAGTCCTTGATGTACAGAATATTGCCTGTGGTGGGAAACATGCAGCCTTGGTGACCAAACAAGGTGAAATTTTTTCCTGGGGGGAAGAATCAGGGGGAAGGCTTGGGCATGGAGTTGACTCTGATGTTCCCCATCCAAAGCTTATTGAATCTCTAAGTAATATGAATATCGAGCTTGTAGCTTGTGGTGAGTATCATACATGTGCTGTGACACTTTATGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTGGGGCATGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCTTTGGAGGGCATACGTGTTTCATCTATATCTTGTGGTCCATGGCACACTGCTGTTGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAGTGTTTCATTGCCTAGGGAAATAGAGTCCTTGAAGGGTGTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCTATTGTGGAGGTTATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTATACATGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAATCAAAACTTGTTCCAACCTGTGTTGTGGCTCTTTTTGAACCTAATTTTTGTCAAGTTGCTTGTGGTCATAGTATGACTGTTGCACTTTCGAGATCAGGTCATGTCTACACAATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATACTCAAGCTGATGGGAAGCTACCAACCCGTGTTGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGAACTGAAGTTTTTACGTGGGGGAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATACTAATGATAAAAACACCCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTAAAAAGTATTGCTTGTGGTACAAATTTTACTGCAGCCATATGCCTGCATAAGTGGGTATCTGGTGTTGATCAGTCCATGTGTTCTGGCTGCCGTCTGCCTTTCAATTTCAAAAGGAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGTAGTAAGAAATCTGCTAAGGCTTCAATGGCGCCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGGAAAACTACAGAAACTGACTCTTCATCTCAGTCTTCTATGAGCAGAAGAGGAAGTATTAATCAGGGGTCACTTGAGCTTACTAGTAAGGATGATAAATTGGATTCCAGATCTCATAATCAACTTGCCAGATTTTCTTCAATGGAATCCTTGAAACAAGTGGACAGCAGGTCTTCAAAGAAAAACAAAAAATTGGAATTCAACAGTAGCCGTGTCTCGCCTGCTCCAAATGGTGGTTCACAATGGGGAGCGATGAATATTTCTAAATCTTTTAATCCTGTTTTTGGGTCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCAGGATCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGACGACCTAGTCCACCTCGTTCAACTACTCCAACCCCGACATTGGGGGGACTTGCATCCCCTAAGATACATGTTGATGAAGCTAAGAGAACCAATGATAGCCTCAGTCAGGAGGTTCTTAAATTAAGATCACAGGTGGAAAACCTGACCCGGAAAGCCCAACTCCAAGAAGTCGAGTTGGAAAGAACTACTAAACAGTTAAAAGAAGCCATAGCAATTGCAAGCGAAGAAACTGGCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCATCTAGGAAGGTCAGATCACCTCCCTCTCTTGCTTCCTTTGGCTCAAATCCTGGTTCCAATGATCTTATCAATGCTTCCTTTGATCGATTGAATATTCAAGCAACCAGCCCAGAATCAGACTCAAGTGGATCCCATAACCAGTTACTTTCAAATGGATCAAGCACCATCACCAACCGGAGTGTAGGTCACATTAAACACAGTCAATCTGATGCAACTAGCAAAAATGGGAGCAAAACAAAGGATAATGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTCACCTCCCTACCAGGAGGTGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCCGAAAATCGAGCAAGAGTATATGAACAGTACAACGTGCGCATGATTGACAAGTCAACCATTGGTGTTGGGAGTGAGGACCTGGCTCATTGATGTGGTGACCTGTCAATGAGGTGTTTTAACAAGTTTTGGCAGGACTTAAAAGCAAGAATGTGCCATCAATTGCATATGGCTTCCATCCAATATATACCATCAAGGGAAGCTGGGATTGGCATAATAGGAGAGAATAGGGATTTGATTGTGATTTTGTAATTCCACTTCTTTCAATTTTTTTTCTAATTTGATTACACTTTCCATTTTTTTCCCTATATGTAGCTTGTCTGGGGGTTAAGGGTGAGAAATGTAAATCTGTAGTAGGTTGTTGGCTCTTGTTTAAAGTAGCTGCGATGTAAATTTCATAAGCGAATGCATTTACTAATTTCTCTTTTACACCAGTTATATAATACCGTCAGCCATGGAATAGATGGCTTTAAGTAGTTAATATAAATAACCTCTGGCAAATGTTATATCTTTTGTGTTCGTACAGTTCTG 3762 0.4226 MSRTDTMTTTSDLNRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKDEKRLKLTNVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRPESRSDGIPSEANSPRTYTRRSSPLNSPFGSNDSLQKDSGDHLRLHSPYESPPKNGLDKAFSDVVYYPIPPMGFFPPDSASGSINSVSSGGSDSMHGQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGAGANQVGSNFGVKVDSLLPKALESAVVLDVQNIACGGKHAALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSNMNIELVACGEYHTCAVTLYGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIRVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGVRTVQAACGVWHTAAIVEVMVGNSSSSNCSSGKLYTWGDGDKGRLGHGDKESKLVPTCVVALFEPNFCQVACGHSMTVALSRSGHVYTMGSCVYGQLGNTQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVFTWGKGANGRLGHGDTNDKNTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSAKASMAPNPNKPYRVCDNCFNKIRKTTETDSSSQSSMSRRGSINQGSLELTSKDDKLDSRSHNQLARFSSMESLKQVDSRSSKKNKKLEFNSSRVSPAPNGGSQWGAMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLASPKIHVDEAKRTNDSLSQEVLKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETGKCKAAKEVIKSLTAQLKDMAERLPVGASRKVRSPPSLASFGSNPGSNDLINASFDRLNIQATSPESDSSGSHNQLLSNGSSTITNRSVGHIKHSQSDATSKNGSKTKDNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTIGVGSEDLAH 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00984 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 477 487 IPR000408 -
Pste7g00984 1107 Gene3D - 501 670 IPR009091 -
Pste7g00984 1107 Gene3D - 231 500 IPR009091 -
Pste7g00984 1107 Coils Coil 869 921 - -
Pste7g00984 1107 MobiDBLite consensus disorder prediction 728 751 - -
Pste7g00984 1107 MobiDBLite consensus disorder prediction 948 968 - -
Pste7g00984 1107 Pfam FYVE zinc finger 659 725 IPR000306 GO:0046872
Pste7g00984 1107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 671 732 IPR013083 -
Pste7g00984 1107 FunFam PH, RCC1 and FYVE domains-containing protein 1 241 492 - -
Pste7g00984 1107 Gene3D - 22 138 IPR011993 -
Pste7g00984 1107 Pfam Transcription factor BRX N-terminal domain 920 951 IPR027988 -
Pste7g00984 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 318 328 IPR000408 -
Pste7g00984 1107 MobiDBLite consensus disorder prediction 137 195 - -
Pste7g00984 1107 MobiDBLite consensus disorder prediction 837 865 - -
Pste7g00984 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 270 331 IPR000408 -
Pste7g00984 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 439 490 IPR000408 -
Pste7g00984 1107 SUPERFAMILY RCC1/BLIP-II 269 660 IPR009091 -
Pste7g00984 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 332 383 IPR000408 -
Pste7g00984 1107 MobiDBLite consensus disorder prediction 984 1035 - -
Pste7g00984 1107 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 66 944 - -
Pste7g00984 1107 MobiDBLite consensus disorder prediction 984 1025 - -
Pste7g00984 1107 MobiDBLite consensus disorder prediction 792 808 - -
Pste7g00984 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 608 655 IPR000408 -
Pste7g00984 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 554 603 IPR000408 -
Pste7g00984 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 332 380 IPR000408 -
Pste7g00984 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 439 487 IPR000408 -
Pste7g00984 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 384 435 IPR000408 -
Pste7g00984 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 502 551 IPR000408 -
Pste7g00984 1107 MobiDBLite consensus disorder prediction 728 808 - -
Pste7g00984 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 425 435 IPR000408 -
Pste7g00984 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 503 554 IPR000408 -
Pste7g00984 1107 FunFam PH, RCC1 and FYVE domains-containing protein 1 493 664 - -
Pste7g00984 1107 FunFam Putative E3 ubiquitin-protein ligase HERC1 665 733 - -
Pste7g00984 1107 SUPERFAMILY FYVE/PHD zinc finger 659 730 IPR011011 -
Pste7g00984 1107 Pfam Unstructured region between BRX_N and BRX domain 962 1031 - -
Pste7g00984 1107 CDD FYVE_like_SF 668 721 - -
Pste7g00984 1107 ProSiteProfiles BRX domain profile. 1034 1089 IPR013591 -
Pste7g00984 1107 Pfam Pleckstrin homology domain 24 130 IPR001849 -
Pste7g00984 1107 PRINTS Chromosome condensation regulator RCC1 signature 384 400 IPR000408 -
Pste7g00984 1107 PRINTS Chromosome condensation regulator RCC1 signature 602 623 IPR000408 -
Pste7g00984 1107 PRINTS Chromosome condensation regulator RCC1 signature 315 328 IPR000408 -
Pste7g00984 1107 PRINTS Chromosome condensation regulator RCC1 signature 441 455 IPR000408 -
Pste7g00984 1107 PRINTS Chromosome condensation regulator RCC1 signature 544 562 IPR000408 -
Pste7g00984 1107 PRINTS Chromosome condensation regulator RCC1 signature 334 350 IPR000408 -
Pste7g00984 1107 PRINTS Chromosome condensation regulator RCC1 signature 425 441 IPR000408 -
Pste7g00984 1107 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 663 725 IPR017455 -
Pste7g00984 1107 MobiDBLite consensus disorder prediction 146 175 - -
Pste7g00984 1107 Pfam Transcription factor regulating root and shoot growth via Pin3 1033 1088 IPR013591 -
Pste7g00984 1107 CDD PH_PLC_plant-like 21 131 - -
Pste7g00984 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 607 658 IPR000408 -
Pste7g00984 1107 SMART fyve_4 657 726 IPR000306 GO:0046872
Pste7g00984 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 555 606 IPR000408 -
Pste7g00984 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 438 IPR000408 -
Pste7g00984 1107 Coils Coil 925 945 - -
Pste7g00984 1107 SUPERFAMILY PH domain-like 22 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00984 Pste-Chr7 9101566 9113474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00984 923 1098 Major Intrinsic Protein MIP AT1G31880 35.294 3.67e-17 82.8