Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00906 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCTGCGTTGAAAGCTGGAGTAGTTAAACATGGCGCAGGCAAATGGCGCACAATTCTTACAGATCCTGAGTTCAGTGCCATTTTGCGGATGCGGTCAAATGTTGATCTTAAGGATAAATGGAGGAATATAAATGTGACTGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAACTTACCAGCTCCCAAAATTGACAATATGGCCTTGAGTACCATAGTTCGACGTGATGAAGTTCTTGATACTAAGCCCTTAGCTGTTTCTGGTGGACCATTGCTATCTCCTAATTTGAAAGAAATATCAAGGTTGGTGGATAATCATATATTGGAGGCCATTGTCAACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCTATTGCTTCTTACATAGAGGGAAAATATCGGACTCCACCAAATCTCAGTAAATTACTGTCATCCAAACTGAAGCATATGGTGACAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGATTGCGCCAAGTTCATCAGTCTCTGAGAAAAGAAGATGCTCCTCATTGGTACTTTTAGAAGGGAGGTCCAGAGATCCTTTAGAAGCATATAAGAATGATGATGTCAACATCCTTTCAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCAGCTGCAAAAGCGGTTGCAGAGGCAGAAGCTGCCATTGCACAGGCTGAAGAAGCAGCTAGAGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCATTAAAATGCAAAATGCTTCATATTTGGTAG 882 0.4331 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNMALSTIVRRDEVLDTKPLAVSGGPLLSPNLKEISRLVDNHILEAIVNMKEQKGSDKAAIASYIEGKYRTPPNLSKLLSSKLKHMVTSGKIIKEKHKYRIAPSSSVSEKRRCSSLVLLEGRSRDPLEAYKNDDVNILSKSQIDAEISKVKGLTAQEAAAAAAKAVAEAEAAIAQAEEAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHIW 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00906 293 Gene3D - 119 193 IPR036388 -
Pste7g00906 293 PANTHER SINGLE MYB HISTONE 4 1 288 IPR044597 GO:0003691
Pste7g00906 293 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pste7g00906 293 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Pste7g00906 293 Gene3D - 2 59 - -
Pste7g00906 293 CDD SANT_TRF 6 57 - -
Pste7g00906 293 Coils Coil 240 277 - -
Pste7g00906 293 SUPERFAMILY "Winged helix" DNA-binding domain 121 193 IPR036390 -
Pste7g00906 293 Pfam linker histone H1 and H5 family 124 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste7g00906 293 SMART sant 4 59 IPR001005 -
Pste7g00906 293 SMART h15plus2 102 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste7g00906 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Pste7g00906 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 109 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste7g00906 293 FunFam Telomere repeat-binding factor 1 2 58 - -
Pste7g00906 293 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00906 Pste-Chr7 8385343 8393253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00906 1 293 Single Myb Histone (SMH) Gene Family AT5G67580 54.153 3.12e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pste7g00906 Linker_histone 1.1e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02003 1 6260549 6262499 Pste7g00906 7 8385343 8393253 PCT