Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00873 ATGATTTCCAACCAAGTCCACGTGTTCCACTCTCCATTTCGCCTTCTCAAACACCCATCAAGCTCAAACCAACAAACCACGCGTCTCTTGCTCCTGCTTCATGCCAACACTAACGCTTCCTTCTCCTTTTCATCAACCATCCTCTGTTCATCGCTCACTGATGACTCCTTTTCCACCCCTAAACCAAACCAGGCACATAAATCTTTTTCTCTTGGATTTTTTCGTTGCCCATACATTCTGATTTCTGAGATAAAAGATTGTGCTATGAGCAAGGCTAATTCCCATTCACCAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTACATCAGAGAGCTACCTTGTCCAAGTTGCCGGGGTAGGGGTTATACTCCTTGTACAGAGTGTGGAATAGAAAGATCAAGACCTGACTGTCCAAAATGTTATGGAAAGGGTATACTGACTTGCCACCAGTGCTCTGGAGATCGTGTTATATGGGAGGAATCTATTGATGAACAACCATGGGAGAGGGCCCGTTCTATTTCTCCACTTAAAGTGAAGGAAGATGATGAAGTTGATAAATTAGACATAAAGCTAGATGTAAAGAAAAAGTCCAAACGTGTATACCAGTCACCATCTCCAGAAGTTGGATTAAAGATCAGTCGTTCATTAAAAGTTAGTTGGCTGCTTAACCTTACTCTCAATATACATAGTCTCAATGCCAAAACTGGTCTGTTTAGTAACCGAATGAGGATTATCCACCAGGATCCCAAGCTTCAGGCACAGCGAGTGGCTGCTATTAAGAAAGCCAAGGGAACAGTTGCAGCAAGAAGGCACACTTCCAGAACTATGAAAGCTTTCTTTAGTGATCCAATAAACAGACAGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTCTACTGTCAAAACTGTGGACGTGAAGGGCATAGAAGACACTACTGTCCAGAACTCAAGGACAGCTTGATTGATAGGCGATTCACATGTAGGGTCTGCGGGGAAAAAGGCCACAACAGAAGAACATGTAAAAAGTTAAGGATAAGCAATAGCAATGGGAGAACAATAAAACACCATAGGTGTAGATTGTGTCGTCAATTTGGCCATAACCGCAGGACCTGCCCTCAAGCTGTTCCTAGTAAAAGGAAGAACACGGCTTCACAAAGAGCATACAAATGTAAGTTGTGCAAGAAAGAAGGACATAATATTAGGACATGTCCTAGTAGAACAGTTGTTACTGAGCATCCTTAATCCCCCTCGTGACAAAAACAAGTGTTTCAACCTGAATCTTATAATATTATGGACAGTAATTGGAACTAGCAGATCTTTATATATTGTTCATGCTCTTATCTATCTGCTGCAGGACCTATTGAGTAATGCCAATCAAACACAAATTTGACAAAATTAGCTAGGGCTAGTTGGTTGTTTGATGAAATAAAATAGTTGGCAGTCATTCATCC 1454 0.4182 MISNQVHVFHSPFRLLKHPSSSNQQTTRLLLLLHANTNASFSFSSTILCSSLTDDSFSTPKPNQAHKSFSLGFFRCPYILISEIKDCAMSKANSHSPEPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRPDCPKCYGKGILTCHQCSGDRVIWEESIDEQPWERARSISPLKVKEDDEVDKLDIKLDVKKKSKRVYQSPSPEVGLKISRSLKVSWLLNLTLNIHSLNAKTGLFSNRMRIIHQDPKLQAQRVAAIKKAKGTVAARRHTSRTMKAFFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDSLIDRRFTCRVCGEKGHNRRTCKKLRISNSNGRTIKHHRCRLCRQFGHNRRTCPQAVPSKRKNTASQRAYKCKLCKKEGHNIRTCPSRTVVTEHP 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00873 414 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 73 347 - -
Pste7g00873 414 Gene3D - 296 344 - -
Pste7g00873 414 SMART c2hcfinal6 390 406 IPR001878 GO:0003676|GO:0008270
Pste7g00873 414 SMART c2hcfinal6 327 343 IPR001878 GO:0003676|GO:0008270
Pste7g00873 414 SMART c2hcfinal6 358 374 IPR001878 GO:0003676|GO:0008270
Pste7g00873 414 SMART c2hcfinal6 300 316 IPR001878 GO:0003676|GO:0008270
Pste7g00873 414 ProSiteProfiles Zinc finger CCHC-type profile. 301 316 IPR001878 GO:0003676|GO:0008270
Pste7g00873 414 Gene3D - 353 411 - -
Pste7g00873 414 SUPERFAMILY Retrovirus zinc finger-like domains 350 407 IPR036875 GO:0003676|GO:0008270
Pste7g00873 414 SUPERFAMILY Retrovirus zinc finger-like domains 298 344 IPR036875 GO:0003676|GO:0008270
Pste7g00873 414 ProSiteProfiles Zinc finger CCHC-type profile. 328 343 IPR001878 GO:0003676|GO:0008270
Pste7g00873 414 Pfam Zinc knuckle 389 405 IPR025829 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00873 13 409 C2H2 Transcription Factor Family AT5G20220 55.231 6.77e-147 422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g00873 7 8104072 8109994 Pste7g00873 7 8104072 8109994 ECH