Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00871 ATGGAGCTTGTACCTGTAAAGTCTGAACTAAGTCCAAGAAGCCATAGGTTGCTCATGATGGATGGTAGTGAGGTTGTTGCTACTAAGTGTGTCAAAAGGCGGCGAAGAGATTCATCAATGGCAGTGTTAGGTGGCAATGGACAACAAGGTGAACAGTTGGAAGAACAGAAGCAACTTGGTGGCCAATCAACTGCCACCACTGTGAAGAGAAGCTCAAGACACAGGTGGACTGGAAGGTTTGAAGCACATCTATGGGACAAAGGGACCTGGAATCCCACTCAGAAGAAGAAAGGAAAACAAGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACAAATTTTCCTGTATCTGATTATGAGAAAGAAATTGGGATAATGAAAACTGTAACCAAAGAAGAATATCTTGCCTCATTGAGAAGGAGGAGCAGCGGTTTTTCCAGAGGTGTGTCAAAGTACAGAGGAGTAGCAAGACACCATCACAATGGAAGATGGGAAGCAAGGATTGGTAGAGTGTTTGGCAACAAGTACCTCTACCTTGGGACTTACAGTACACAAGAAGAGGCAGCTCGTGCATATGATATTGCAGCAATCGAATACAGAGGCATAAATGCAGTGACAAACTTTGACTTGAGCACCTACATTAGATGGCTCAGACCAGGAACACATCCTACTGCTTCTCAAGATCAAAAGCCTAGCATAGATCATCAACCCTTTGCTACTTCCATGCAAACCAGAGGAAACATTGAGGCATCCAACGATTCCAACAGGCATTCATTTCCCTCAAGTGAATTGGACAGTACCAAGAAGCAGGACTTTTCTAAGTACATCACCCCTTTGAGTCCTTGCAACAAGCCATCTTCCCCAACAGCGTTAGGACTACTCCTAAAATCCTCAGTGTTTAGAGAACTGATGCAAAGAAATCTGAACTCTTCAAGTGAAGAACCTGAAGAAGTTGAACTGAAATACCCACAAGAGGGCAATGATGGGGTTGGAGGGATTTATGATAATAACAAAACCAGTAACTCTTACTTTTGCTCTTCCAATGTCAACAGATTACCTAACTTGGAGTCATCAGAAGAAAGTCCAATGCCAATGTATAATGGAACTGTTCAATCCCTATGGAATAGTACTTTCAACATGTCTGTCTAA 1194 0.428 MELVPVKSELSPRSHRLLMMDGSEVVATKCVKRRRRDSSMAVLGGNGQQGEQLEEQKQLGGQSTATTVKRSSRHRWTGRFEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIGIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGTHPTASQDQKPSIDHQPFATSMQTRGNIEASNDSNRHSFPSSELDSTKKQDFSKYITPLSPCNKPSSPTALGLLLKSSVFRELMQRNLNSSSEEPEEVELKYPQEGNDGVGGIYDNNKTSNSYFCSSNVNRLPNLESSEESPMPMYNGTVQSLWNSTFNMSV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00871 397 MobiDBLite consensus disorder prediction 42 71 - -
Pste7g00871 397 ProSiteProfiles AP2/ERF domain profile. 166 224 IPR001471 GO:0003700|GO:0006355
Pste7g00871 397 Pfam AP2 domain 165 216 IPR001471 GO:0003700|GO:0006355
Pste7g00871 397 ProSiteProfiles AP2/ERF domain profile. 67 130 IPR001471 GO:0003700|GO:0006355
Pste7g00871 397 CDD AP2 165 226 IPR001471 GO:0003700|GO:0006355
Pste7g00871 397 SMART rav1_2 166 230 IPR001471 GO:0003700|GO:0006355
Pste7g00871 397 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Pste7g00871 397 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 57 295 - -
Pste7g00871 397 FunFam AP2-like ethylene-responsive transcription factor 165 226 - -
Pste7g00871 397 SUPERFAMILY DNA-binding domain 165 226 IPR016177 GO:0003677
Pste7g00871 397 SUPERFAMILY DNA-binding domain 72 132 IPR016177 GO:0003677
Pste7g00871 397 Gene3D AP2/ERF domain 67 132 IPR036955 GO:0003700|GO:0006355
Pste7g00871 397 Gene3D AP2/ERF domain 165 226 IPR036955 GO:0003700|GO:0006355
Pste7g00871 397 MobiDBLite consensus disorder prediction 263 282 - -
Pste7g00871 397 MobiDBLite consensus disorder prediction 36 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00871 Pste-Chr7 8100447 8102920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00871 66 247 AP2-EREBP Transcription Factor Family AT5G57390 61.497 4.66e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste7g00871 AP2 8.2e-12 CL0081