Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00814 GAACAGAGTGATTGAAGAGAGAGATATAATAATATAAACCCACAGCGCGCACCATTCTCCACTGTCCAAGGAGATCAAGCACCAAACCCAACACACCACAAAACCCACTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCATTCTCTTTGGTTTGGTTATGTTGAACTGAGTTCGGGGGTTTCCGTTTTCTATCAATGGATCCGGGAGCGATGATGAACGAGGGTTCTTTCGCCAATAATGGCAGCGGCAATACGACGCCGTTTAGCTTAGCAGAGATCTGGCAGTTTCCTCAAGCCATGAATGGCGGCGGAGGATTGGGTCTCAGAAGCCCGCAGTTCGGACATGCCCAGGGCCAGTTTGGGGATTTTTCTCCCCCCCCGGCCCATGGGCTTGGGCCCTGTAACTCCAGAAAGAGGCGCGACTCTGAAGACGATTCCGCTAAGACCGTCTCCACCAGCAATGCCGCTAATGAGGGTGATGGAAAACGCGTTAAAGGGAATAAGAATGAAGGTGGTGATGGAAATAACAGTAACAAAGGTGAAGGAGAAGTCATTTCAGGAAAGCCTGCGGAGCAAAACGGGAAGCCACCTTCGGAGCCTCCAAAGCAAGATTATATTCACGTTCGAGCAAGAAGGGGTCAAGCCACTGATAGCCACAGTCTTGCAGAACGAGCTAGAAGGGAGAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTACCAGGTTGTAATAAGGTTATTGGGAAAGCACTGGTCCTTGATGAGATAATTAATTATATCCAATCTCTTCAGCGCCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCCGTGAACTCGAGACTTAACTCTGGCATTGAAGCGTTTCCTCCTAAAGATTTTGGTCAGCAAGCGTTTGATCCCTCCGGCATACAGTTCGGTTCGCCGGCTCCGAGAGAATATAGCAGAGGTTCTTCACCAGACTGGTTACATATGCAGGTTGGTGGGTTTGACAGAACAACGTAGTCTATGAGATCCCTTGGTAATAAATACATAAACCAGCCTTTAGTAGCTCCAAGAAAACATCAATGGTATACTCAAGGAAGCAAGTCCAATTGGCACTTCATTCCCATTTCCTACACTAGGCATGGAGCTGTTACTGTTTTTCACAGGATTGCTTCAGTTTCTATTTAAGCATCTCCATATGTTAGTGTGTTGGAAAATGAATTCATTTACTCAATATGTGTATTATAGTGGACTTTTAGGCTTTGTATTATGGTACTCTCAACATAACCCTTAAAATGATCATTCTTCTTGTAAAAGAATGCTTCTTCATCTTAATACATTTTGCTTACATATTGTGTAATAGTCTCTATATTGGTGTTTATGAAGCAATTTTGCTTAAATTAACGGAATACAATCTTGTTTTAGG 1411 0.4387 MDPGAMMNEGSFANNGSGNTTPFSLAEIWQFPQAMNGGGGLGLRSPQFGHAQGQFGDFSPPPAHGLGPCNSRKRRDSEDDSAKTVSTSNAANEGDGKRVKGNKNEGGDGNNSNKGEGEVISGKPAEQNGKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIEAFPPKDFGQQAFDPSGIQFGSPAPREYSRGSSPDWLHMQVGGFDRTT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00814 269 MobiDBLite consensus disorder prediction 1 21 - -
Pste7g00814 269 Gene3D - 146 222 IPR036638 GO:0046983
Pste7g00814 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983
Pste7g00814 269 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983
Pste7g00814 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 216 IPR036638 GO:0046983
Pste7g00814 269 Coils Coil 196 216 - -
Pste7g00814 269 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 73 238 IPR024097 GO:0006355
Pste7g00814 269 MobiDBLite consensus disorder prediction 33 138 - -
Pste7g00814 269 MobiDBLite consensus disorder prediction 241 269 - -
Pste7g00814 269 FunFam Basic helix-loop-helix transcription factor 146 218 - -
Pste7g00814 269 SMART finulus 155 205 IPR011598 GO:0046983
Pste7g00814 269 CDD bHLH_AtBPE_like 139 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00814 Pste-Chr7 7559995 7563239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00814 1 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 58.848 4.77e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste7g00814 HLH 2.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00489 1 1585243 1588520 Pste7g00814 7 7559995 7563239 PCT