Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00793 ACCACCAATTTTCTGTTTTTTTTTTACTTCATTCAGGATCATTGATATTCTCATCTTGCTTGCATGACATCAATGGAGGAATCTTGGACTAGTTGGCTGTGTGATATGGTGAGATCATCTTACACACCATAGTTAATAATTTTTTTACAGGATTGAAGTTTTTGTGAATCAAGTGTGTTGCTCGATCTACATTGTTTCAGGAACCAGATGATTACAGCCTCATATGTGAAACAGACATAAAGGTGGATGATGTGAACCCGCAAAGCTCATTTTGCAAGAGTAGCTTAGAGAGGTCTTTGAAGTTACTCAAGACATGCACTTCAAACCCTGCCAAAACTGACCAACTCTCGCAAAAGACAGCTTCTTCTCCCTGCTCCTATATTCTCTCCTTTGACAACGCCAATCCAACACCAATGAAGGTTGAATCAGTTTCAAATCCTGTGAATCATGACAAAGCTTTAGCTTCAAAGAAGGAACCAAGACGGGAGAGCAAGAAAATGGGCCCATTGTCCAGATCTTCTCATCACACACAAGATCACATAATTGCTGAGAGAATGAGGCGAGAAAAGATAAGCCAGAAGTTCATTGCCCTCTCAGCCCTTATTCCAGACCTCAAAAAGCTGGACAAGGTGTCAGTGTTGGGGGAGGCTATAAGGTATGTGAAACAGCTGAAGGAGCAAGTGAAGGCTCTGGAGGAGCAGAGCAAAAGGAAAAGCGAGGAAGCGGTGATGCTTGCGAAGAAATCTCAGGTCTGCGGTGCGGACGAGGATTTCTCAGACACTTCGTCAAATTCGTGTGAGTACGGAAACTCCGATGATCCCTCATCAAAAACAAATCTGTCACTGCCAGAAGTTGAAGCAAGGGTGTCAAAGAAGAACGTGCTTATTCGAATCCTTTGCGAGAAAGACAAGGCGGTGCTCGCCAACATATTTAGAGAGATTGAGAAGCTTCATCTCTCGATCATCAATAGCACCGCCTTGTCCTTCGGTTCCTCTGTTCTCGACACAACCATCGTAGCCGAGATGGAGGACGAATTCAACATGAACGTTAAGGAACTAGCTGCAAACCTCAGAGTAGGACTGATGCAATTTATGTAGTGGATTCACGGGACTGAGATGCAATAAGACCGCCATTTTAGTGTATTAAATATCCTACTTAATCTAATCCTAGTTGTAAGCTCCATATTTTGAAGTCGCTTAAATAGTTGTAAACATGGCCATGCCATGGAAAAAGGATGTCCACATCAGCATTAATGTCGTGATCCCCCAACAATAAATAACTATGGTCCATTATCGAAAGTTGGGATTTAACATGTTGCAAAAGGCTAAGAACCTTGGAAACTATGCATTGTATAACTTTCCTTCTCTACTTTTGTTTTCACCTTTCATTACTTCTATTTCC 1401 0.4204 MKVESVSNPVNHDKALASKKEPRRESKKMGPLSRSSHHTQDHIIAERMRREKISQKFIALSALIPDLKKLDKVSVLGEAIRYVKQLKEQVKALEEQSKRKSEEAVMLAKKSQVCGADEDFSDTSSNSCEYGNSDDPSSKTNLSLPEVEARVSKKNVLIRILCEKDKAVLANIFREIEKLHLSIINSTALSFGSSVLDTTIVAEMEDEFNMNVKELAANLRVGLMQFM 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00793 227 Gene3D - 38 115 IPR036638 GO:0046983
Pste7g00793 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 37 86 IPR011598 GO:0046983
Pste7g00793 227 PANTHER BHLH TRANSCRIPTION FACTOR 18 226 - -
Pste7g00793 227 Coils Coil 76 110 - -
Pste7g00793 227 Pfam Helix-loop-helix DNA-binding domain 41 87 IPR011598 GO:0046983
Pste7g00793 227 MobiDBLite consensus disorder prediction 14 43 - -
Pste7g00793 227 MobiDBLite consensus disorder prediction 1 43 - -
Pste7g00793 227 SMART finulus 43 92 IPR011598 GO:0046983
Pste7g00793 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 107 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00793 Pste-Chr7 7312152 7313719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00793 23 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.780 5.54e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste7g00793 HLH 8.5e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g00793 7 7312152 7313719 Pste7g00793 7 7312152 7313719 ECH
Pste1g01718 1 5278398 5279580 Pste7g00793 7 7312152 7313719 PCT