LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste7g00752	CTTTGGTTACTTTTTCTTCATCTTCTTCACAATTTTTTGACTTTTAATATGGGAGGGGCATCACTGCCGCCAGGATTTCGTTTCCATCCAACTGATGAAGAACTACTGGGATACTACCTTAAAAGAAAAGTAGAGGGGCTTGAAATTGAGCTTGAAGTTATACCCGTCATTGATTTTTATAAATTCGATCCATGGGAGTTGCCAGAGAAGTCTTTCCTTCCAAAACGGGATTTGGAATGGTTTTTCTTCTGTCCACGGGATCGCAAGTACCCAAATGGATCAAGAACAAATAGAGCTACCAAAGCTGGGTATTGGAAAGCCACAGGAAAAGACAGAAAAGTGGTGTGCCAGTCTAATCCATCCACTGTTACAGGGTACCGCAAGACCTTGGTTTTCTATCTTGGGAGGGCTCCTTTAGGGGATAGAACTGATTGGGTCATGCATGAGTATCGCCTCTGTGATGACCTTGGCCAACCTACACCATCTTTCCAGGGTGGTTTTGCTTTGTGCCGGGTCATTAAGAAGAATGAGATGGCAAGTGCTTCCTCACAGGGAGAACACAAGAGCAAAAGGGCTGCAAGCAGTTCCATCAATGGGACTGACACCTCAATGAGATTCACTAGCGAACCATTCAGCAACTCTGGTGATGCTTCCTCTCAAGCAAGTCACCTGAACAATGAGAGTCGTTATTCTAGCCCTATTACCTCTCCATACAATGTGGCTCCAATGGGAGAGTTTAACCAAGCTTCTGTGGAAACCAATCCTTCAAACTTCTGGATCTCCCCTGATATGATTCTTGATTCTTCAAAGGACTACCCTCAATTACAAGATGCCGTTGCTGAATATTTTCCACGGTATGACTTACCAAGTGTGATGACACCATGGCAATCATTGGAACATCCAGAAACTTCATCTAGTTTGTCCAACCCAAATTTCAATGGGGAAGTTGAATTTGCTGATAATCTCAGTCAAATAGGCTGCATGTCACATTACCCTAGACAATGGAATTCCATGGACTTCTATGGAAATGCTGATGTTCCTTATGAAGTTTACGATCCATTTAACTCAATCTCTATCCAGAACCCTTTTAGAAGCTGA	1098	0.4308	LWLLFLHLLHNFLTFNMGGASLPPGFRFHPTDEELLGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSNPSTVTGYRKTLVFYLGRAPLGDRTDWVMHEYRLCDDLGQPTPSFQGGFALCRVIKKNEMASASSQGEHKSKRAASSSINGTDTSMRFTSEPFSNSGDASSQASHLNNESRYSSPITSPYNVAPMGEFNQASVETNPSNFWISPDMILDSSKDYPQLQDAVAEYFPRYDLPSVMTPWQSLEHPETSSSLSNPNFNGEVEFADNLSQIGCMSHYPRQWNSMDFYGNADVPYEVYDPFNSISIQNPFRS	365

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste7g00752	365	Gene3D	NAC domain	31	180	IPR036093	GO:0003677\|GO:0006355
	Pste7g00752	365	ProSiteProfiles	NAC domain profile.	22	175	IPR003441	GO:0003677\|GO:0006355
	Pste7g00752	365	MobiDBLite	consensus disorder prediction	180	232	-	-
	Pste7g00752	365	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	21	225	-	-
	Pste7g00752	365	FunFam	Nac domain-containing protein 86	31	178	-	-
	Pste7g00752	365	SUPERFAMILY	NAC domain	10	175	IPR036093	GO:0003677\|GO:0006355
	Pste7g00752	365	Pfam	No apical meristem (NAM) protein	23	152	IPR003441	GO:0003677\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste7g00752	Pste-Chr7	6863152	6864917	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste7g00752	17	304	NAC Transcription Factor Family	AT4G17980	57.192	1.03e-109	321

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Pste7g00752		NAM	1.6e-37	No_clan

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