Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00714 ATGAATTGGGTTCACACTCAAATCTGCCATAGCAGTGATGCTATCAACAACCCCACTAGAATTTCCCCATCTTCTTCTTGTTCTTGTTCTTCTTCTGCATCATTGCCTTATAATTCTGAATACAACAAAAAATTAGCCACTCCTTTAGCTTCTTCATCTGGCACTAGAATAAGCCCAGCACTTGTTTTCATCTTTGTCATTCTAGCTATTGTGTTTTTCATCTCTGGTCTCCTTCACCTGCTTGTTAGATTCCTCATAAAATTCAGGTCCTCTTCATCAGTTTCTCAGTCCAATAGGTACTCTGACCTGTCTGAATCTGATCCTTACCAAAGACAGTTACAGCAGCTATTCCATATGCATGATTCAGGCCTAGATCAGGCCTTCATAGATGCTCTCCCAGTTTTTCTCTACAAAGAGATAATAGGTTTGAAGGAGCCATTTGATTGTGCAGTGTGCCTTTGCCAATTCTCAGAACAAGACATGCTGAGGCTGTTGCCCCTTTGCAACCATGCTTTCCACATTGATTGCATAGACACATGGCTGCTGTCAAATTCAACTTGTCCTCTCTGTAGAGGGAGTCTTTATGAGCCAGGGTTTGCCTTTGAAAACCCAACTTATGACTTTGAGGGGTTGAGAGAAGAAGATGGGGTTTCAGGCAGTGTTGCTGGTGAGGCTGGTTCCACCAACAAGCATGCAGAAAACCACATAATGAGTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGGAAGTTTAGAAGCTCAAATAATGGAGAGGGAGTGGAAAGAGGAAATGGAGGGGAGAGTAGTACTAGCAATTTGGATGTTAGGAGATGCTATTCAATGGGGTCATTTCAGTATGTGGTTGCTGATTCAGATTTGCAAGTTGCTTTATGCCCCAATAGAGGTGATGGTGGAGCTGCCAGTGGTGCCAGTATGAGACAATTGAAGGTGAGATTGGCCAATTATGGAAATTCTTCCACTGATGGAGCAGATGTTGAGGGGAAAAAAATCAACATTGCAAGGAAAGGAGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAAGAAGGACAAGGTATCAAGTTCACCACAAAACCATTTGGGTGGTTCTAATGTGTCTGCAGCTTTGCCTTGGATGAATAGAGCTCAAGCTCAAGGTACATGA 1164 0.4296 MNWVHTQICHSSDAINNPTRISPSSSCSCSSSASLPYNSEYNKKLATPLASSSGTRISPALVFIFVILAIVFFISGLLHLLVRFLIKFRSSSSVSQSNRYSDLSESDPYQRQLQQLFHMHDSGLDQAFIDALPVFLYKEIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEPGFAFENPTYDFEGLREEDGVSGSVAGEAGSTNKHAENHIMSGKRVFSVRLGKFRSSNNGEGVERGNGGESSTSNLDVRRCYSMGSFQYVVADSDLQVALCPNRGDGGAASGASMRQLKVRLANYGNSSTDGADVEGKKINIARKGESFSVSKIWQWSKKDKVSSSPQNHLGGSNVSAALPWMNRAQAQGT 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00714 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 196 IPR013083 -
Pste7g00714 387 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Pste7g00714 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 52 351 - -
Pste7g00714 387 SUPERFAMILY RING/U-box 128 197 - -
Pste7g00714 387 FunFam RING-H2 finger protein ATL46 111 196 - -
Pste7g00714 387 Pfam Ring finger domain 148 191 IPR001841 -
Pste7g00714 387 SMART ring_2 149 190 IPR001841 -
Pste7g00714 387 CDD RING-H2_EL5-like 148 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00714 Pste-Chr7 6554034 6555197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00714 76 358 C3H Transcription Factor Family AT2G18650 38.217 9.73e-55 184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g00714 7 6554034 6555197 Pste7g00714 7 6554034 6555197 ECH
Pste1g02092 1 6575346 6577880 Pste7g00714 7 6554034 6555197 PCT