Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00695 CGTAAGAGCAAATTGTAAAATAAGAATTTCTAGGGTTTCAGATCTCTTCGATTTCCCCTCCGATCATTCAGAATCCTCGAGGTTTCTTTCTGTTGATCTCATTTTTTTTCTTCGCCACGCACTCTTGTCTCTGTAACTGGTGATTCTAGTTCTGGACAATGTCTCGTGTTTACGTTGGGAATTTAGACCCTCGAGTCTCTGAGAGGGATCTTGAAGATGAATTTCGTATATATGGTGTTCTCAGGAGTGTCTGGGTTGCTCGTCGACCACCTGGATATGCATTTATTGAGTTTGATGATCGAAGGGATGCACTTGATGCAATTCATGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGGCGTGGGCGTGGAGGTGAAGACCTGAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGTCGCTTGCGCATTGGGTCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCAAGTTATGGGTATAGCCGCAGGAGTTATAGTCCTCGAGGGAGAAGATCTCCAAGGCGCCATAGCATATCACCTCCCCGGGGGCGCAGCTACAGCAGATCCCCTCCATATCGTCCTTCTCGCCGTGATTCACCTTATGCCAATGGTGTAGTTCCTCTAGGACTGGTTGAGCTTACCAGACATGTAAGTTATGTTAATGTCATGATAATGGGTATTGTTAAGAACTTAGCTTTTGACGAAACTACAAAGTGTTGTAGCCGCCAAAAGGGTGCATTGGACACTGTTTTTGCATCGGCTGTCTCTCTTCTGCTTACTGAAACATGA 863 0.4693 MSRVYVGNLDPRVSERDLEDEFRIYGVLRSVWVARRPPGYAFIEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGRGGRGRGGEDLKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRRSPSYGYSRRSYSPRGRRSPRRHSISPPRGRSYSRSPPYRPSRRDSPYANGVVPLGLVELTRHVSYVNVMIMGIVKNLAFDETTKCCSRQKGALDTVFASAVSLLLTET 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00695 234 SMART c2hcfinal6 88 104 IPR001878 GO:0003676|GO:0008270
Pste7g00695 234 CDD RRM_SRSF3_like 3 71 - -
Pste7g00695 234 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 166 - -
Pste7g00695 234 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Pste7g00695 234 FunFam Serine/arginine-rich splicing factor RSZ21A isoform C 76 149 - -
Pste7g00695 234 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Pste7g00695 234 MobiDBLite consensus disorder prediction 109 173 - -
Pste7g00695 234 SUPERFAMILY Retrovirus zinc finger-like domains 78 105 IPR036875 GO:0003676|GO:0008270
Pste7g00695 234 SUPERFAMILY RNA-binding domain, RBD 3 82 IPR035979 GO:0003676
Pste7g00695 234 Gene3D - 2 69 IPR012677 -
Pste7g00695 234 ProSiteProfiles Zinc finger CCHC-type profile. 88 103 IPR001878 GO:0003676|GO:0008270
Pste7g00695 234 SMART rrm1_1 3 69 IPR000504 GO:0003723
Pste7g00695 234 Pfam Zinc knuckle 88 103 IPR001878 GO:0003676|GO:0008270
Pste7g00695 234 Gene3D - 76 148 - -
Pste7g00695 234 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00695 Pste-Chr7 6350746 6353466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00695 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 41.935 6.64e-06 44.7