LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste7g00634	AAATATTTGACCCTATCTATGTTTTCTATCTCATAAACCCTTTCTTCCATCTCATTTTCATATACTCATTGCGTCTCTCTCAACCTTACCTTACCACCTTAGAGTTCAGACTGTCATTCAGAAATGGAGCTTAGTTTTAAGCACCAACTTGGCCTTGTTTGTGTAATACTGCTCTTTCCTGCACTCTGTTACAGCCAGGAATACTACACTAAATCCAGGGCAACCTTTTATAGTACCTCTGATGGCTATGGAACTCCAAGTATGTGTATCACCCTCCGATCTTCTAGCTATCTATCTTATTCTAATTCATAGTATTAATCCATCTTATGTGCCAATAAAAATAATTTGTTTATACAACAAACACAATAATAGTTATTATAAAAACACAAATACAAACACATATTATATATATTATATATATATATATATGTTCACTTTTGTATCTTCTCATGTTTACTTTATTTTTGTTCTCCTTTTTTCTTTTATATCACTATACATTTAAAGAATATAGATATTAAAGATGCATGCATGTCTTTGAAGATGCTTTTTAACATTTTAGATACACAGTGGTTGTTATGCAATCAAGTTAATCATATAACAAATTGGAATTATATATAAATTTTAGCCGGAGCATGTGGATTCGGTGAATAAGGAAGGAAGATGAATTGGTATGATGGAAGAGTTGCGGGGGTGTCTGGGCTATATAGGAATGGAGTTGGGTGTGGTACATGTTATCAGGTAAAGTGCCTAATATCAAGTTTGTGTGATGAGAATGGAGCATACCTGGTGGCAACAGACCAAGGTTATGGAGACAGAACAGACTTCGTAATGAGCCCACAAGCCTTCTTAAAATTGGGTCGCGATCAGAAATCATACGAAGAGCTTAAGAAATACGGCACTGTGGATATTGAATACAAAAGGGTTCCCTGTACATACACCGGCAATGTTTTGTTCCACATCAAGGAAACTAGTAGCAACCCTGGTTACTTTGCTGTGGTCATTCTCAATGTTAATGGAGTACATGACATCACTGCTGTTGAGATGTGGCAGGCGGAGTCTGGAAAATGGAAGTCACTTAACAGGAACTATGGAGCAGTATTTGACTTTCCTAACCCACCGAGTGGCGAAATCCGCTTGAGGTTTAAGGTTAGTGGCAGGGCCGATTGGGTGGACCCCATGATCGTCATACCTAGTAATTGGTACCCTGGAAGTACTTACGCCACCAAGGTTCAACTTTAAGAATGAATCTCTGCAACATTTTACCCATAATAATAGCTGTTATTATCGAGTTTGTTTGTTTATCATAATAACGTGTCTTTCTATTGTCAAAAAGGCTGGACTAGAATAAAGAGAGATTCATATGTACTTCCCATTTAACAATTTACATGTAATATCAAATCAGTGAAATAAAATTATCATCTTCTTGTTAACA	1432	0.3624	MNWYDGRVAGVSGLYRNGVGCGTCYQVKCLISSLCDENGAYLVATDQGYGDRTDFVMSPQAFLKLGRDQKSYEELKKYGTVDIEYKRVPCTYTGNVLFHIKETSSNPGYFAVVILNVNGVHDITAVEMWQAESGKWKSLNRNYGAVFDFPNPPSGEIRLRFKVSGRADWVDPMIVIPSNWYPGSTYATKVQL	192

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste7g00634	192	Gene3D	-	2	91	IPR036908	-
	Pste7g00634	192	Pfam	Lytic transglycolase	8	85	IPR009009	-
	Pste7g00634	192	Gene3D	-	92	192	IPR036749	-
	Pste7g00634	192	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	108	188	IPR007117	-
	Pste7g00634	192	PRINTS	Expansin/Lol pI family signature	11	29	IPR007118	GO:0005576
	Pste7g00634	192	PRINTS	Expansin/Lol pI family signature	136	150	IPR007118	GO:0005576
	Pste7g00634	192	PRINTS	Expansin/Lol pI family signature	78	94	IPR007118	GO:0005576
	Pste7g00634	192	PRINTS	Expansin/Lol pI family signature	174	188	IPR007118	GO:0005576
	Pste7g00634	192	PANTHER	EXPANSIN-B3	8	191	-	-
	Pste7g00634	192	SUPERFAMILY	PHL pollen allergen	95	187	IPR036749	-
	Pste7g00634	192	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	9	95	IPR007112	-
	Pste7g00634	192	Pfam	Expansin C-terminal domain	97	177	IPR007117	-
	Pste7g00634	192	SUPERFAMILY	Barwin-like endoglucanases	5	95	IPR036908	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste7g00634	Pste-Chr7	5885303	5886901	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste7g00634	5	192	Expansin Gene Family	AT4G17030	45.833	8.88e-58	180