Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00629 ATTGCTTACAAAATTTACCTGAGCGAGAATGGTACAATGGCTGAGGCAGAATGTGTACTGTCAATTAAGCACCAAGTTGGGCTTGTTTGTGTGATATTGCTCTTCCCTGCACTGTGTAGTTGCCACGAATTCGTTACCAACTCCAGAGCAACCTATTACAGTACTCCTGATTGCCTTGGCAATCCAAGGGGAGCTTGTGGCTATGGAGAATATGGAAGAACGATTAATTATGGCAATGTAGCAGCGGTGTCTGGGCTATGGAGAAATGGAGCTGGTTGCGGTGCATGCTATTGGGTACGGTGCAAAGTGGCAAAATACTGTGGGAACGGAGTACAGGTGGTGGCAACAGACTATGGCGCGGGTGACAGAACGGACTTCATAATGAGCAAACATGCGTTCTCAGGATTGGGAAGGAATCCGGGTGCTTCAAAAGAGTTGTTGAAACAAGGAGTGGTGTATATCTCATTCAAAAGGGTTCCATGTAAATACCCTGGTAACATCAAGCTCCGTGTTCAGGAGAGCAGCAAAAACCCAGGCTACTTTGCTGTTGTTATTCTCAACGTGAATGGAGTAAACGACATCACCGCTGTTGAGATGTGTCAGAGAGGGCAGAAACGATGGGAGGCACTGCGTAGGGCCTATGGGACAGTGTTTGACTTTGCAAACCCACCCAGTGGTGAAATCAGGTTGAGATTCCAAGTTGTCTATAAATATTGGCTGCTACCAAACACTACTATCCCTGCTAATTGGAAGTCTGGAGCTATTTATGACACCAAATCATTTTTAAGCATGGAACACAGTTTTAAGCACCAAGTTGGGCTGCTTTGTGTGATATTGCTCTTCCCTGCACTGTGTAGCTGCCACGAATTCGTTACCAACTCCAGAGCAAGCTATTATAATACCCCTGATGGCCTTGGCAATCCAAGGGGAGCTTGTGGCTATGGAGAATATGGAAGAACGCTTAATTATGGCAATGTGGCAGCGGTGTCTGGGCTATGGAGGAATGGAGCTGGCTGCGGTGCATGCTATTGGGTACGGTGCAAAGTGGCAAAATACTGTGGGAACGGAGTACAGGTGGTGGCCACAGACTCGGGGGCGGGTGACAGAACGGACTTCATAATGAGCAAGCATGCGTTCTCAGGATTGGGAAGGAATCCGGGTGCTTCAAAAGAGTTGTTGAAACAAGGAGTGGTGGATATCACATTCAAAAGAGTTCCCTGTGCATACCCTGGTAATATCAAGCTCCGTGTTCAGGAGAGCAGCAAGAACCCAGGCTACTTTGCTGTGCTCATTCTCAACGTGAATGGAGTAAATGACATCACCGCTGTTGAGATGTGGCAGAGAGGGCAGAAGCGATGGGAGCCCCTGAGAAGGGTGTATGGAACAGTGTTTGACTTTGCGAACCCACCCAGTGGAGAAATACGGTTGAGGTTCCAAGTTGGCTACAAATATTGGCTTCTGTCAAATACTCTTGTCCCTGCTAACTGGAAGGCTGGAGCTATTTATGACACCAAAGTTCAGCCATATTAACACCAACAAAATGCGCATTTCCACACCCCCACCAACATACCACAAATTAATAATAAGTACTTGTATTAATTTTTCCTTTAATTTGTTTCTTATCACTGTCTCTCAATGTTGTTGTTAGTTCACTGAAGTTGAATAATGGGATTCATGTACCCACTAAATAAATTTCCATTCAAGACTACATATATGTACATGGAATATTAATAAAACATAATTGCCTTGATGTGTTAAATTTAAATTACTTTGTCTCTATGTCAATGGGCATATAAGAATTGAAAACAGCATTGCAAATTTTTTTTTCCATGAAAAATTTTCAGAAATAA 1850 0.4422 IAYKIYLSENGTMAEAECVLSIKHQVGLVCVILLFPALCSCHEFVTNSRATYYSTPDCLGNPRGACGYGEYGRTINYGNVAAVSGLWRNGAGCGACYWVRCKVAKYCGNGVQVVATDYGAGDRTDFIMSKHAFSGLGRNPGASKELLKQGVVYISFKRVPCKYPGNIKLRVQESSKNPGYFAVVILNVNGVNDITAVEMCQRGQKRWEALRRAYGTVFDFANPPSGEIRLRFQVVYKYWLLPNTTIPANWKSGAIYDTKSFLSMEHSFKHQVGLLCVILLFPALCSCHEFVTNSRASYYNTPDGLGNPRGACGYGEYGRTLNYGNVAAVSGLWRNGAGCGACYWVRCKVAKYCGNGVQVVATDSGAGDRTDFIMSKHAFSGLGRNPGASKELLKQGVVDITFKRVPCAYPGNIKLRVQESSKNPGYFAVLILNVNGVNDITAVEMWQRGQKRWEPLRRVYGTVFDFANPPSGEIRLRFQVGYKYWLLSNTLVPANWKAGAIYDTKVQPY 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00629 509 PANTHER EXPANSIN-B3 280 507 - -
Pste7g00629 509 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 166 IPR007112 -
Pste7g00629 509 SUPERFAMILY PHL pollen allergen 412 503 IPR036749 -
Pste7g00629 509 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 425 504 IPR007117 -
Pste7g00629 509 SUPERFAMILY Barwin-like endoglucanases 31 166 IPR036908 -
Pste7g00629 509 SUPERFAMILY Barwin-like endoglucanases 277 412 IPR036908 -
Pste7g00629 509 Gene3D - 410 509 IPR036749 -
Pste7g00629 509 SUPERFAMILY PHL pollen allergen 166 257 IPR036749 -
Pste7g00629 509 Pfam Lytic transglycolase 84 154 IPR009009 -
Pste7g00629 509 Pfam Lytic transglycolase 330 401 IPR009009 -
Pste7g00629 509 CDD DPBB_EXLB_N 46 161 - -
Pste7g00629 509 Pfam Expansin C-terminal domain 167 247 IPR007117 -
Pste7g00629 509 Pfam Expansin C-terminal domain 413 493 IPR007117 -
Pste7g00629 509 SMART dpbb_1 80 156 IPR007112 -
Pste7g00629 509 SMART dpbb_1 326 402 IPR007112 -
Pste7g00629 509 Gene3D - 39 161 IPR036908 -
Pste7g00629 509 Gene3D - 285 408 IPR036908 -
Pste7g00629 509 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Pste7g00629 509 PRINTS Expansin/Lol pI family signature 308 326 IPR007118 GO:0005576
Pste7g00629 509 PRINTS Expansin/Lol pI family signature 395 411 IPR007118 GO:0005576
Pste7g00629 509 PRINTS Expansin/Lol pI family signature 490 504 IPR007118 GO:0005576
Pste7g00629 509 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 309 412 IPR007112 -
Pste7g00629 509 CDD DPBB_EXLB_N 292 407 - -
Pste7g00629 509 Gene3D - 162 259 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00629 Pste-Chr7 5832616 5841244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00629 264 506 Expansin Gene Family AT4G17030 50.201 3.14e-76 238