LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste7g00573	ATGTACGAACAGAGTAGTACCTACGAGTCAGACTTGGCGCTCTTGGATTCAATTCGCCGCCACTTATTGGGCGAATCCGAATCCATATTCGGAGCCCCGAGTGGCGTGTCGGGTCGGAGCTCCACTTTCAGCAGCTTGTACTCGTGTTTGAGTGATAATTGGGGAGAGCTTCCGTTTAAGGAGGACGATTCCGAAGACATGGTGCTCTACGGCGTGCTCCGTGACGCCGTTAACGTGGGCTGGGTCCCATCTCTTGACGCCGGCTCTCCCGAAAGCATCTCGTCGGGTTTTGTGGCGGAGATCGTGGTGAAGCAGGAGCCGGACGTGATGCCGGCGGTCACGAGTGTGCCGCCCGAAGAGCCGGCGGAGAAGAAGCTGATTCCGGCGAAGGGGAAGCACTACCGCGGCGTGAGGCAGCGCCCGTGGGGGAAGTTCGCTGCCGAGATTCGGGACCCGGCGAAGAACGGGGCTAGGGTGTGGCTGGGGACATTTGAGACGGCGGAGGACGCGGCGTTGGCGTACGACCGCGCTGCGTACCGAATGCGGGGGTCGAGGGCGTTGCTGAATTTTCCGTTGAGGGTTAATTCCGGCGAGCCCGACCCGGTTAGGGTGACGTCAAAGCGATCGTCGTCGCCGGAGAATGCGGCAGCGCCGGCGAAGAGGAAGAAGGTGGTAGGGACGGTGCAGAGGCAAGTGGGAAGTCAAGTGGCAGAGTGTACACGTGCCGAACAGTTATTGACACTTGTTATCTGTGAGGTGATAAAGATAGGGGACAAGGATAAAGAGGAGGACAATGTTTCTTCCTTTTCATTTGGGTCCTTTACTGTGTTTCGTGCCCGGATAAGGGGTCCTTTGGCTAACATTATGATCTTCTTCATGAGCCAACCTTCTGTTGTGGTGGCTCACCTCATGGGTGGTGTTGTTGTGTACATGTCTGCAGTTTTGTAA	948	0.5696	MYEQSSTYESDLALLDSIRRHLLGESESIFGAPSGVSGRSSTFSSLYSCLSDNWGELPFKEDDSEDMVLYGVLRDAVNVGWVPSLDAGSPESISSGFVAEIVVKQEPDVMPAVTSVPPEEPAEKKLIPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSSPENAAAPAKRKKVVGTVQRQVGSQVAECTRAEQLLTLVICEVIKIGDKDKEEDNVSSFSFGSFTVFRARIRGPLANIMIFFMSQPSVVVAHLMGGVVVYMSAVL	315

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste7g00573	315	ProSiteProfiles	AP2/ERF domain profile.	133	191	IPR001471	GO:0003700\|GO:0006355
	Pste7g00573	315	CDD	AP2	132	191	IPR001471	GO:0003700\|GO:0006355
	Pste7g00573	315	FunFam	Ethylene-responsive transcription factor 2	132	192	-	-
	Pste7g00573	315	Pfam	AP2 domain	133	183	IPR001471	GO:0003700\|GO:0006355
	Pste7g00573	315	SUPERFAMILY	DNA-binding domain	133	193	IPR016177	GO:0003677
	Pste7g00573	315	PANTHER	DNA-BINDING DOMAIN	120	223	IPR044808	GO:0003700\|GO:0009873
	Pste7g00573	315	Gene3D	AP2/ERF domain	132	194	IPR036955	GO:0003700\|GO:0006355
	Pste7g00573	315	SMART	rav1_2	133	197	IPR001471	GO:0003700\|GO:0006355
	Pste7g00573	315	PRINTS	Ethylene responsive element binding protein signature	157	173	IPR001471	GO:0003700\|GO:0006355
	Pste7g00573	315	PRINTS	Ethylene responsive element binding protein signature	134	145	IPR001471	GO:0003700\|GO:0006355
	Pste7g00573	315	MobiDBLite	consensus disorder prediction	198	221	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste7g00573	Pste-Chr7	5348649	5353464	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste7g00573	9	248	AP2-EREBP Transcription Factor Family	AT4G17500	55.639	9.30e-83	249

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pste7g00573		AP2	1.4e-14	CL0081