Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00554 TCTCCACCCGCACGGCCCTCCTTAGCACTCCAAAACTTGCTGCTTTTCATCTCCTTCACTCTTTCTCTCACCAAACCCTCTGTCCAATACCCTCTAACTCAAGTTCTGAGTCTCAGTCTCAGTTCACAACTTCTAATTTTTTTTAACATTAAGACTAGAAATGATGGTTGAAAAGGAAGATTTGGTTTTGAGTCTAAGCCTCAACTTCCCTAAGAATACCCCAAACCCTCAACATCTGACTCTCATCACGTCCTCTTCCCCTTCTGGCTTCAATCCTCAAAAAACCTCTTGGAACGAAGCTTTCGTTTCTTCGGATCGAAACTCGGACACATGCAGAGGCGAAACACGATCGTTCCTGCGCGGAATCGACGTGAACCGGTTACCTTCGGGCGTAGACATGGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAGCACCGTTTCGAGCGTGAGCGGAAAAAGAAGCGAGAGAGAACCAACCGGCGAAGAAAACGACATGGACAGAGCCTATTCCCGCGGAATCAGCGACGAAGAAGACGGCGAAACCTCAAGGAAAAAGCTTAGACTCTCCAAGGACCAATCAGCTATTCTGGAAGAAAGCTTCAAAGAACACAATACCCTCAACCCCAAGCAAAAGTTGGCCCTGGCAAAACAGCTGGGGCTCCGACCAAGACAAGTAGAGGTCTGGTTCCAGAACCGAAGGGCAAGGACCAAGTTGAAGCAAACAGAGGTGGACTGCGAGGTGTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAGGTTCAGGAGCTTAGAGCACTGAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCACCCACAACGCTCACTATGTGCCCTTCTTGCGAGCGTGTGGCCGTTCCGTCCTCCGCCGTTGATGCCGCCACGCGTCATCATCCCATGTCCCAGTCCCATCATCGCCCCTTACCCATTGGGCCGTGGGCTTCATCGGCTCCCATTCCGCACCGGCCGTTCGATGTTTTCCACCACTGATCTGGACGGTGTTTTCGTCATTGTGAATTATTATTATTCTTATTATTTTGATGGTCCTACTTTTAGCTTGTACCTCAAAGGAAAAAGAGAAAATTGGGGGAGCGGTTGTAACAGCGTACTGTGGCATTGTACATTCCCCGGTGTAGGATATGGTCATTAGAAGAAGCGATTTGGTGGGTCTCCAATGTTTTGTACCTGTTTGATCCATCCTTTTTTGTTTTTGTTTGTTGGGTATGACCTATATTAGTTACCAGGTTTTTAGTTTTTAGTATTACTTCAATTTTCTCCCCATGTCTAGACTAAACAGACTTTCTGTAAAGTGCATTTCTCTAGTGACATTATATAGATTTACTTTTCATATACCGTTTCAATTCACTTAATTACGG 1416 0.4675 MMVEKEDLVLSLSLNFPKNTPNPQHLTLITSSSPSGFNPQKTSWNEAFVSSDRNSDTCRGETRSFLRGIDVNRLPSGVDMEEEAGVSSPNSTVSSVSGKRSEREPTGEENDMDRAYSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRHHPMSQSHHRPLPIGPWASSAPIPHRPFDVFHH 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00554 289 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Pste7g00554 289 SMART halz 186 229 IPR003106 GO:0006355|GO:0043565
Pste7g00554 289 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Pste7g00554 289 Pfam HD-ZIP protein N terminus 2 104 IPR006712 GO:0005634
Pste7g00554 289 CDD homeodomain 130 187 IPR001356 GO:0003677
Pste7g00554 289 PRINTS Lambda-repressor HTH signature 166 182 IPR000047 GO:0003677
Pste7g00554 289 PRINTS Lambda-repressor HTH signature 157 166 IPR000047 GO:0003677
Pste7g00554 289 Pfam Homeobox associated leucine zipper 186 220 IPR003106 GO:0006355|GO:0043565
Pste7g00554 289 MobiDBLite consensus disorder prediction 79 133 - -
Pste7g00554 289 MobiDBLite consensus disorder prediction 101 133 - -
Pste7g00554 289 MobiDBLite consensus disorder prediction 85 100 - -
Pste7g00554 289 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Pste7g00554 289 CDD bZIP 179 218 - -
Pste7g00554 289 SUPERFAMILY Homeodomain-like 119 187 IPR009057 -
Pste7g00554 289 SMART HOX_1 128 190 IPR001356 GO:0003677
Pste7g00554 289 FunFam Homeobox-leucine zipper protein 18 117 191 - -
Pste7g00554 289 Gene3D - 134 184 - -
Pste7g00554 289 Coils Coil 185 222 - -
Pste7g00554 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 46 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00554 Pste-Chr7 5160633 5162523 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00554 1 281 Homeobox Transcription Factor Family AT4G16780 67.254 1.94e-115 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste7g00554 HD-ZIP_N 2.1e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01107 1 3559965 3561595 Pste7g00554 7 5160633 5162523 PCT