Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00493 ATGGAAAGACACAAATGCAAACTCTGTTCAAGGTGTTTCAGCAATGGGAGAGCCCTTGGTGGACACATGAAGGCTCATCTTGCTACTCTCCCTCCCAAGACTCAAAGCTTCTCTTATTCCTCTTCCTCCGACTCAGAACAAGAACAAGAACAAGAGCCGCTCAGAGAAGAATCTCTCACTGACTCGCTCAGGGAGAATCCTAAGAAGAACTTCAGGGTGGAGGATCCAGAAGACAGGGAGAGCGAGACCGAGTCAAAGAATCCCACTCGCCAACGATCCAAGCGTAACCGCACCCTCAACCTCAGCTTCGTCTCCACACCTCCCCAAACCGAACCCGAACCTGTCAGCTCCGTCTCCGACACCTCCCCTGAGGAAGACCTCGCCATGTGCCTCATCATGCTCTCCAGGGACACCTGGAACCTCCACACCAATGCAGCTCCACCCAAGACCCGCTGCACTCGCCGAAAGCACCTCTGCCACAATTGCTCTAAGGCCTTTCGATCCTCTCGCGCTTTAGCCACTCACACAACCATATGCTCCCCTCATCACCACCAAGGTCAAAACACTAACACCCATTCTACTAAGCTTTTTCAATGTCCCTTTTGTTACAAGGTCTTTGCCTCCGGTCAAGCACTTGGTGGACACAAGAGATCTCACCTCATTCCCTCTTCTTCCTCTTCCATACTTAAATTGAAACAGCACACCTTCATAGATCTCAACTTGCCCGCTCCCCCAGAACACGATGACCTTAGCGTTCTATCTGATGCTTAA 771 0.5123 MERHKCKLCSRCFSNGRALGGHMKAHLATLPPKTQSFSYSSSSDSEQEQEQEPLREESLTDSLRENPKKNFRVEDPEDRESETESKNPTRQRSKRNRTLNLSFVSTPPQTEPEPVSSVSDTSPEEDLAMCLIMLSRDTWNLHTNAAPPKTRCTRRKHLCHNCSKAFRSSRALATHTTICSPHHHQGQNTNTHSTKLFQCPFCYKVFASGQALGGHKRSHLIPSSSSSILKLKQHTFIDLNLPAPPEHDDLSVLSDA 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00493 256 SMART c2h2final6 4 26 IPR013087 -
Pste7g00493 256 SMART c2h2final6 197 219 IPR013087 -
Pste7g00493 256 SMART c2h2final6 157 183 IPR013087 -
Pste7g00493 256 MobiDBLite consensus disorder prediction 94 123 - -
Pste7g00493 256 MobiDBLite consensus disorder prediction 33 123 - -
Pste7g00493 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Pste7g00493 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 219 IPR013087 -
Pste7g00493 256 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 255 IPR044303 GO:0006355
Pste7g00493 256 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Pste7g00493 256 MobiDBLite consensus disorder prediction 48 91 - -
Pste7g00493 256 MobiDBLite consensus disorder prediction 33 47 - -
Pste7g00493 256 Pfam C2H2-type zinc finger 197 220 - -
Pste7g00493 256 Pfam C2H2-type zinc finger 3 28 - -
Pste7g00493 256 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Pste7g00493 256 Gene3D Classic Zinc Finger 136 220 - -
Pste7g00493 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 189 IPR013087 -
Pste7g00493 256 SUPERFAMILY beta-beta-alpha zinc fingers 4 219 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00493 Pste-Chr7 4654608 4655378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00493 1 253 C2H2 Transcription Factor Family AT3G60580 35.099 1.94e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste7g00493 zf-C2H2_6 1.1e-09 CL0361