Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00474 TATTAGTTAAGATAAAAAAATGTGGTTTATGAAATTAATTATATATTAGCAAATGTAGATTTTGACCTTCATTCATTCATCATCTGAACTCATACCAAGACTCTTCCTTTTCATCTCTTTTCCACCATCCAACAACTGCTCTTCAATCCGTGCGACACCAAAACCCTAGATCCGCCACCATCATCGGGAGAGAGAAAGGTTTTGAGACAATATTGCTAGAGAAGAGAGGAACGGTGGGCTTGGCAAGAAATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCCGTTCACGAGCCAAACTTCCGGACGGTGGTTGGTGGTTCCTATGATGAAAGAAGGTTTATAGATGAAAGATATCCAAGGGATGCTGTTTACCAGAGAAATAATTTCCACCGGGAAATTTTGGATAGAGAGGCCTATTTGCCACCAGGACCTCCTGTGGACCACTGGAGTCAATCCAAACGGAGGGGTTATGATGAAGATTATCCAGTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCATATAATGAGATCGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATATGAAAGGTTTCGAGAAGGCTACACTGGCATTGACAACTATGGTGAGCGAGGATTTGATAAACCTGCTAGGTTTGTTGGACATGACGGTGATGATTATTCATATGATGATTACGACTACAAGTCCCGGGCTTCCTCACATCATCGGAGGGAGGATAGCCATGAGAGGGATTATGATCATGGCAGGCATAGTTATGATTCTGATTATGAAAGAGGCAGTAGAAGAGATGGTAATTGGAGGCGACGTGAATCACGTGACCGAGAACGAGGAGATAAGAGAGGTCATAGTCGGGAAAGAGATCAGAGTCCACATAGGAGACATGAGCATTCTCGTTCACATTCTCGTTCTCGATCAAGTTCTCGTTCTCGATCCCGGTCTCATTCCCATTCTCATTCACGATCTCAATCTCGTGGATATGATGACCATCCAAGATCTAGGTCCCCTCGAGGTCGAAGCCATGGTCGAAGTTATAGGGAAGATAGCTATACTGACAGTCGATATGACAAAAGTGAAAGACGTAGAGATCGTGATGATAAACGTCAGAGGGAGCATTATTCTGTGGCCCCATCTGCTACTGTTGTTGTTAAAGGTCTTTCACAGAAGACAACCGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGGCCCCTTCGTCATGTTCGTGTTATAAAGGAGAGAAACTCTGGTGTCTCCCGTGGATTTGCTTTTATTGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGATGATGGTCTTGTTGTGGATGGCAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCTGGTCCAGACGGAGTTATGAAATCAGGCCATAATTATAAGAGCATAACAGTTCCATCCGATTGGATGTGCACTATATGTGGCTACATAAATTTTGCACGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGAACAGATGATGCTCCTGCAGCAGATATTTCTTTATCAAATTCAGCTGCTATTGGAAAGAAAGGTTTGGAGGCTGGTCCAACTCATGTTCTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCTAAACATGCTCCTATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACATTTTTATTCGGTGGAGGATGCTACCAAAGCTCTGGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAAATTCTAAGAGTGGCATATGCTAAAAGTATCCTCGGCCCTGGATCAGGAACATCTGGAACTTCCCAATCAAGCAGTCTTGCGGCTGCTGCTATTGAGGCTGCAACATTTGCCCAGCAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAATCCAGATGACAAGCAATCTACTGGTCCAGAGCAAACTGGCACAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAACAATACATACCTTGCACTGATCAAAATCAGAATAAAACATCTAATAACGAGTCAGAACCTTCTAAGGCATCTGATGGTTCTGGAAGTAAAAAAGTCATTTCTGCACCAGCTACTACTGTTACATCAGTTGAGAAGCCTGCCTCATTGGCAGATGCTGTCCAGGCTGCTGCAACTGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAAATCAAAGGAAATAAAACTTGCCTCAAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGGCAGGCTACTCGAGTGGCTCTGGAAGACAATCAGCCTCCTGTTTCAGCTGATGATAGGTCGTATTCTTCTGGACATTCTGCAAAGAATAAGTTAAAAAATGAGCCTATGGTAAGGGAAAGTAACGCTGCTACTAATTCAGGAATGCACACAACTCTTGCCCAGGTTGCTGCTATAGATTCTCAGGTACAACCACGGCCTGTTAGTAATAGCCTTGGAGGCACTGTGATGGGGGTTATAAGGGGCTCAGGAAGAGGCATTGTTAAACCAGAGACTTATTCAGGTTCTACATCTGTTATGCCGCCATCTATGCCAATTTCATCTTCAGCAAATGCTGATGCACAGACAGTTGCTACTCCCTTTAGAACAGATGTATCTGCCCTGGTTTCATACGTACCATCTGCGACTGTTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCATCAACTCACAAGGAACAACCTCAAACAACTTACAGGGATCGTGCAGCTGAGAGGAGAAGTTTGTATGGTTCATCATCTTCAGTTGGAAATGATTTGGCTGACCTGGATATTGGGGATTCAAGTAAGACTACTTAA 3114 0.4371 MDPGRYALHQGWDNNSALEGYGAVHEPNFRTVVGGSYDERRFIDERYPRDAVYQRNNFHREILDREAYLPPGPPVDHWSQSKRRGYDEDYPVDRESRRFQRPYHESYNEIDGFRDREIDTYPEYERFREGYTGIDNYGERGFDKPARFVGHDGDDYSYDDYDYKSRASSHHRREDSHERDYDHGRHSYDSDYERGSRRDGNWRRRESRDRERGDKRGHSRERDQSPHRRHEHSRSHSRSRSSSRSRSRSHSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREDSYTDSRYDKSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGVMKSGHNYKSITVPSDWMCTICGYINFARRTSCYQCNEPRTDDAPAADISLSNSAAIGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGPEQTGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKTSNNESEPSKASDGSGSKKVISAPATTVTSVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPPVSADDRSYSSGHSAKNKLKNEPMVRESNAATNSGMHTTLAQVAAIDSQVQPRPVSNSLGGTVMGVIRGSGRGIVKPETYSGSTSVMPPSMPISSSANADAQTVATPFRTDVSALVSYVPSATVGSGRRRFSEMPHSASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLDIGDSSKTT 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00474 954 SMART zf_4 418 442 IPR001876 -
Pste7g00474 954 MobiDBLite consensus disorder prediction 165 230 - -
Pste7g00474 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 471 551 IPR000504 GO:0003723
Pste7g00474 954 SUPERFAMILY RNA-binding domain, RBD 469 558 IPR035979 GO:0003676
Pste7g00474 954 Pfam OCRE domain 613 661 IPR041591 -
Pste7g00474 954 PANTHER RNA-BINDING PROTEIN 209 933 - -
Pste7g00474 954 CDD RRM1_RRM2_RBM5_like 469 549 - -
Pste7g00474 954 SMART rrm1_1 472 547 IPR000504 GO:0003723
Pste7g00474 954 SMART rrm1_1 315 390 IPR000504 GO:0003723
Pste7g00474 954 MobiDBLite consensus disorder prediction 663 689 - -
Pste7g00474 954 MobiDBLite consensus disorder prediction 930 954 - -
Pste7g00474 954 MobiDBLite consensus disorder prediction 775 789 - -
Pste7g00474 954 MobiDBLite consensus disorder prediction 69 99 - -
Pste7g00474 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 394 IPR000504 GO:0003723
Pste7g00474 954 Gene3D - 415 446 - -
Pste7g00474 954 MobiDBLite consensus disorder prediction 80 99 - -
Pste7g00474 954 SUPERFAMILY RNA-binding domain, RBD 303 398 IPR035979 GO:0003676
Pste7g00474 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 375 IPR000504 GO:0003723
Pste7g00474 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 473 539 IPR000504 GO:0003723
Pste7g00474 954 MobiDBLite consensus disorder prediction 231 255 - -
Pste7g00474 954 MobiDBLite consensus disorder prediction 759 791 - -
Pste7g00474 954 MobiDBLite consensus disorder prediction 256 308 - -
Pste7g00474 954 ProSitePatterns Zinc finger RanBP2-type signature. 420 439 IPR001876 -
Pste7g00474 954 MobiDBLite consensus disorder prediction 165 311 - -
Pste7g00474 954 SUPERFAMILY Ran binding protein zinc finger-like 411 446 IPR036443 -
Pste7g00474 954 MobiDBLite consensus disorder prediction 898 954 - -
Pste7g00474 954 ProSiteProfiles Zinc finger RanBP2 type profile. 416 445 IPR001876 -
Pste7g00474 954 Gene3D - 458 599 IPR012677 -
Pste7g00474 954 Gene3D - 278 414 IPR012677 -
Pste7g00474 954 CDD OCRE_SUA_like 610 662 IPR035623 -
Pste7g00474 954 MobiDBLite consensus disorder prediction 587 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00474 Pste-Chr7 4523867 4531045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00474 313 535 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 4.05e-10 61.6