Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00445 AAGAGAAAAGAAAAGAACGTAGCAATACCCTTCCCTGTCGTGGTGTGTGCCCTTGGTTTTATATCACTGTTACTGCGCATCCTTCCTTTGGTTTCTACTACCGACTCCGACGAAGGAGTGAACAACAAACCCAACCCTTACGCAGCTAACTTCACTTCACTTCAGTTAACTCACCGTTTCTCATTCTGCTTAATTGTGATTCGGAAGAAGGACACGCATTGTTCGTCCTTGGATTCAACTTTTAGCTGCTCCTCACTCTCTCGCTCACTTTTTTGGAAGTCTTTGTTTACTGATGCAAGAATGAGTTCATTCTCCATCACACGGAAAAAGACACCATTCCAGAAGCATAGAGAAGAGGAGGAGGCAAAGAAGAAGAGAGCGGAAGATGAGACTGCTCGCCTGTATGCCGAGTTTGTAGAGTCATTTCAAGGAGATACTACTCCTGGGTCAAAGACTTTTGTTCGAGGAGGAACGATTAATCCCAATGATAAATTTAAAGATGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGAACCCTCCACGAACCTCTCTCTGCGGCGATTTTTGCATTGGAGGTGACTTCTGCACTAACAGTGAATTCTATAATTGCCAGATGTTCGTCGGACGATGTGACAGCCATGGTAGAGTTTTCGCAAGAAAGAAGAAGGTGTGATTGGATGATCCATCTAATCCTACAGGTCAGACCATGTGATTTTACTGATCCCACTAAAACAAGTTCTGTGAAGGTCCTTGTGTATGGTGTTATTCTCCCTCAGAAGCTTATTCTCTTGTATGTACCATCTTTTATTCCACCTCCAATGGCTACGAAAGGGAAAGAATCTGAAAGGAAAGTCTGTATCTCAATTGAAGCTGACTCCAGTCGCTTTGATGAGCTGCCTGATGACTTTGACCCTAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTCCGCACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATCATGTGGCCAAGGACAGAGGAGGAAAGAAGGCGGCAAAGAAACTGTGGTTTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCAGCAAAAGATGAAATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAAGTCCGTTGCCCTCCCATCGCAAGCACTACCTGCGCCTCCGCCGGGGCACATGGCTATCAGGAGTAAGGAGGGTAGTACTGTGATCTTATCTGGTCCTTCAGGTCCACCTGTAACCTCTGTTCCTAATCAGAATTCTGAACTCGTTCTAACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATTTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGTAATCCTCTTTTCAACTTCTTGTTTGTTCTTGGCTCAAAGGAACATACCTACTACGTTTGGAGACTCTATTCATTTGCCCAGGGTGATACTCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGGTGGATTCCTCCCTCATTACCAACATCAAAAAGTCCAGAACATGAAAAAGAATCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGGGTAGAGCCTGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTGCGCGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTAGATAATGCAGATGCAGCTGGCGAGATAGTTGAAGTTTTGACTGAATCCTTGACACTTAAAGAAACCCCTATTCCAACTAAAATTGCAAGACTTATGCTGGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCAGCATATCGCACCAAGTTTGAAGCAACATTACCGGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAATGGGACGTATTACTGCTGAAGCACTAAAGGAACGAGTGCTGAAAGTTTTACAAGTTTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGCTTAAGAGCCACTTTCCTTCGACCTGGGAACTCTGGTGTAATTCCATTCCATTCCATATGTGGTGATGCACCTGAAATTGAGCAGAAGACCACTTCTGAAGATATAATAGCTGGTAGCAAGACCAACCAAGATGCTGCATTAGCAATGGGTCGAGGGGCTGCGACGAAGGAGCTAATGAGTCTTCCTCTTGCTGAGCTGGAGAGACGGTGCCGACACAATGGATTATCACTAGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGCTTAGTCTTGAAGAGGCAGAAAAGCAGAGAGGTTATGAACTAGATGATGAATTGAAATATGCCCACAACCAAGTGAGTTCTGGGAAATATTCAAGTAATCAGCGAGAAACAAGTGCAGAACCTGAACCTATAGGACTTTCTGCATGGAACCACTATGGAGATGAAGATTTGCCGTCACAGGGCAGAAGTTCTGTATCTTTGGCCTCAACCCTTCCTATTCCGCAGCCTGAACTTAAAGCCTTCACAAAGAAGGAGAAGAATGACCCAGTGCTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAAAGTGATGATGAACAAAGAAGAGGTGGAAAAAATCTTGGCTTAAGCTACTCATCTTCTGGTAGTGAGAATGTGGGTGATGGTCTTGTTAAAGCTGATGAATCTGAGTCTGCAGCTGACACAAGTTTTTCAGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAACTGAGACGCTTGGAAGTTGCTTTAATTGAATACCGTGAGTCTCTTGAAGAGAGGGGAATTAAAAATTTGGAGGAGATTGACAAGAAAGTTGAATCACATAGGAAACGGCTGCAAGTGGAGTACGGGTTATCTGATTCTGGTGAAGATGGCAATAGAAAAACTTCAGAGAGGAGGGATAGGCATGATGTTTCAAGGAAACGGCACCGAAGCCGTAGCCCAAGTGATAGTCCACAGCAAAAATTATCAGGCAAAGACAGAGATAGAGAACATGATTTAGAAAGGGATCGAGACAGACGAGATAGAAGTTACGATTTCGATAATGAAAGAGGAAGGGACCGGCACAGGGAAAACAGTGGAAGCAGAGAGAGGGATGATCATGATAAGGACAGAAGCAGGGACAGGGATAGAGACAGGGACAGGAGAAGACGAACCAAATAGGAACATTTCAGGTGTGTCACCGGAGAGATCTGTTCTACTTATGATTTGCAGATTGGCTTGTAAGAGTCTAGAGGACAGTTGGCTTTTGTCATCACAGGGGGATATGGCAATGTGAATGAAACGTTTGCCAGAAAAGTGTTACTGTAAACAATCTTCCTAAGTGCCAGAAAAGTGTTACTGGCTCTTCATACCCCCCATAATTTAACTTGATGTAATTTGAATTTTAAATCGTTAATTTTGCCCGTGAATCAAGAAAAGTGTTACATGCTGCTGCACAATGCATATTAAATCAAGAGGGTTCTGTTCATACTGATTATTGAATAGTTCAACAGGGAGATTCGGATGACCGTGTTTGGGCGTGCTAGCTGCTGGGTAAGGTGTAGTTAGTTTAAAGCATTTTGGAATGACATTGTTTATCGCGTAATGATACATATTAGTATTGTGGACGAATTATGAATTCCTACGCTAGTTATTATTTGATAAAAATCAATA 3837 0.43 KRKEKNVAIPFPVVVCALGFISLLLRILPLVSTTDSDEGVNNKPNPYAANFTSLQLTHRFSFCLIVIRKKDTHCSSLDSTFSCSSLSRSLFWKSLFTDARMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKTFVRGGTINPNDKFKDDSEGEKSKDGVSGPKKGSRTLHEPLSAAIFALEVTSALTVNSIIARCSSDDVTAMVEFSQERRRCDWMIHLILQVRPCDFTDPTKTSSVKVLVYGVILPQKLILLYVPSFIPPPMATKGKESERKVCISIEADSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTSKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKTTSEDIIAGSKTNQDAALAMGRGAATKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSSNQRETSAEPEPIGLSAWNHYGDEDLPSQGRSSVSLASTLPIPQPELKAFTKKEKNDPVLPASKWAREDDESDDEQRRGGKNLGLSYSSSGSENVGDGLVKADESESAADTSFSAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDKKVESHRKRLQVEYGLSDSGEDGNRKTSERRDRHDVSRKRHRSRSPSDSPQQKLSGKDRDREHDLERDRDRRDRSYDFDNERGRDRHRENSGSRERDDHDKDRSRDRDRDRDRRRRTK 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00445 1114 Coils Coil 117 137 - -
Pste7g00445 1114 CDD RRM_SR140 328 411 IPR035009 -
Pste7g00445 1114 PANTHER RNA PROCESSING PROTEIN LD23810P 300 1045 - -
Pste7g00445 1114 MobiDBLite consensus disorder prediction 986 1030 - -
Pste7g00445 1114 SMART rrm1_1 330 406 IPR000504 GO:0003723
Pste7g00445 1114 Coils Coil 963 983 - -
Pste7g00445 1114 MobiDBLite consensus disorder prediction 553 586 - -
Pste7g00445 1114 Pfam cwf21 domain 963 1007 IPR013170 -
Pste7g00445 1114 MobiDBLite consensus disorder prediction 161 183 - -
Pste7g00445 1114 Pfam CID domain 593 721 IPR006569 -
Pste7g00445 1114 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 331 403 IPR000504 GO:0003723
Pste7g00445 1114 Gene3D - 308 412 IPR012677 -
Pste7g00445 1114 CDD cwf21_RRC1-like 962 1011 IPR047491 -
Pste7g00445 1114 MobiDBLite consensus disorder prediction 1037 1114 - -
Pste7g00445 1114 MobiDBLite consensus disorder prediction 146 186 - -
Pste7g00445 1114 ProSiteProfiles SURP motif repeat profile. 478 521 IPR000061 GO:0003723|GO:0006396
Pste7g00445 1114 SMART cwf21_2 962 1011 IPR013170 -
Pste7g00445 1114 MobiDBLite consensus disorder prediction 560 586 - -
Pste7g00445 1114 MobiDBLite consensus disorder prediction 834 850 - -
Pste7g00445 1114 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 329 410 IPR000504 GO:0003723
Pste7g00445 1114 SUPERFAMILY ENTH/VHS domain 590 727 IPR008942 -
Pste7g00445 1114 Gene3D - 586 732 IPR008942 -
Pste7g00445 1114 Gene3D Surp module 464 533 IPR035967 GO:0003723|GO:0006396
Pste7g00445 1114 MobiDBLite consensus disorder prediction 986 1114 - -
Pste7g00445 1114 SUPERFAMILY Surp module (SWAP domain) 452 533 IPR035967 GO:0003723|GO:0006396
Pste7g00445 1114 SUPERFAMILY RNA-binding domain, RBD 322 417 IPR035979 GO:0003676
Pste7g00445 1114 Coils Coil 989 1009 - -
Pste7g00445 1114 MobiDBLite consensus disorder prediction 834 967 - -
Pste7g00445 1114 MobiDBLite consensus disorder prediction 867 881 - -
Pste7g00445 1114 Pfam Surp module 476 528 IPR000061 GO:0003723|GO:0006396
Pste7g00445 1114 SMART 558neu5 593 728 IPR006569 -
Pste7g00445 1114 ProSiteProfiles CID domain profile. 586 731 IPR006569 -
Pste7g00445 1114 ProSiteProfiles SAP motif profile. 780 814 IPR003034 -
Pste7g00445 1114 Gene3D - 962 1013 - -
Pste7g00445 1114 SMART surpneu2 476 530 IPR000061 GO:0003723|GO:0006396
Pste7g00445 1114 Coils Coil 591 611 - -
Pste7g00445 1114 MobiDBLite consensus disorder prediction 889 921 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00445 329 398 Eukaryotic Initiation Factors Gene Family AT3G16380 38.571 4.66e-06 48.9