Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00424 TACCACTAGCAGCGAACAACACCGCCGCCACTGCCACACTTCGAAGACGCAACGCAAAGCCGAAGAAGCTAAACGACGCTATGGAGGACGAAATGTACGGCGTGCCGTCCACGGCGGAGTACTCCGACAAGGCGCTGATGACGCCGGAGAATATATTTCCGGCGGAGTATCACAGCTTCTTCATGTCCTCCGCCGGCCGGATTCCGATGTTCGGATCCGACGAGTTACTCTCCGCCGCCGCCGTCGCCGCCACCACCGCCGCCAGTGACATGACCGAACCCTACCAGAGCGTCACAATCGCAACCGAAATTCCGCGCCACAACGACACGTCGTCTCTCATCAAAGCGAAAATCGCCTCTCATCCTCACTATCCTCGCCTCCTCGAGGCCTACATCGATTGCCAGAAGGTTGGAGCGCCTCCAGAAATCGCGTGTTTGTTAGAGGAAATCCGAAGAGAAAACGACGTTTGCAAGAGAGACGTTGTTTCCACGTGCGTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATACAAATCCGATCTGACGCGGCCTTTTGACGAAGCCACCACCTTCCTCAACAAGATCGAAACGCAGCTTACTGATCTCTGCAGCGGTTCTTCTTTTCCAACCCTTTCCGATGATGGGGGTGTATCTTCAGAAGAAGGTTATAGTGCTGGAGATGGTGATCCCCAAGATAGCCAATCAAGGGGTGAAGATCGAGAGCTGAAGGATAGGCTTTTACGAAAATTTGGAAGTCACATTGGTTCTTTGAAATTGGAATTTTCAAAGAAGAAAAAGAGGGGTAAGCTGCCGAAAGACGCTAGGCAAACACTACTTCAGTGGTGGAATATTCACTACAAATGGCCTTACCCTACGGAAGGTGATAAGATTGCACTGGCTAAATCAACTGGGTTAGACCAGAAACAAATTAATAACTGGTTTATTAATCAAAGAAAGCGCCACTGGAAACCATCTGAGAATATGCCCTTTGCTATGGTAGATGGTCTGACTGGCCAGTTCCTTACTGATGAA 1058 0.5047 MEDEMYGVPSTAEYSDKALMTPENIFPAEYHSFFMSSAGRIPMFGSDELLSAAAVAATTAASDMTEPYQSVTIATEIPRHNDTSSLIKAKIASHPHYPRLLEAYIDCQKVGAPPEIACLLEEIRRENDVCKRDVVSTCVGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLTDLCSGSSFPTLSDDGGVSSEEGYSAGDGDPQDSQSRGEDRELKDRLLRKFGSHIGSLKLEFSKKKKRGKLPKDARQTLLQWWNIHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSENMPFAMVDGLTGQFLTDE 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00424 326 SMART KNOX1_2 85 129 IPR005540 GO:0003677|GO:0005634
Pste7g00424 326 Pfam KNOX2 domain 138 185 IPR005541 GO:0003677|GO:0005634
Pste7g00424 326 ProSiteProfiles ELK domain profile. 223 243 IPR005539 GO:0003677
Pste7g00424 326 CDD homeodomain 255 307 IPR001356 GO:0003677
Pste7g00424 326 Pfam KNOX1 domain 87 128 IPR005540 GO:0003677|GO:0005634
Pste7g00424 326 ProSitePatterns 'Homeobox' domain signature. 281 304 IPR017970 GO:0000981|GO:0006355
Pste7g00424 326 SMART ELK_2 223 244 IPR005539 GO:0003677
Pste7g00424 326 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 89 313 - -
Pste7g00424 326 SUPERFAMILY Homeodomain-like 244 317 IPR009057 -
Pste7g00424 326 ProSiteProfiles 'Homeobox' domain profile. 243 306 IPR001356 GO:0003677
Pste7g00424 326 Gene3D - 242 312 - -
Pste7g00424 326 SMART KNOX2_2 135 186 IPR005541 GO:0003677|GO:0005634
Pste7g00424 326 SMART HOX_1 245 310 IPR001356 GO:0003677
Pste7g00424 326 Pfam ELK domain 223 244 IPR005539 GO:0003677
Pste7g00424 326 MobiDBLite consensus disorder prediction 188 222 - -
Pste7g00424 326 Pfam Homeobox KN domain 263 302 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00424 Pste-Chr7 4093153 4101620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00424 3 326 Homeobox Transcription Factor Family AT1G23380 65.875 1.62e-146 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pste7g00424 KNOX2 6.3e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01862 1 5742294 5759239 Pste7g00424 7 4093153 4101620 PCT