Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00404 ACATACTATAAAACATATATTCTCCTCTTCCAAAAATTCTCACTATCTCATGTTGTTGTTCTGTTTTTTTTTTTCTTCTTGACTTTTGGCTTTTATCCTGTCATGGAATACGAGCAAAAAACCATCACCACCAAGTTAGTAAAATCATCCTCTAGATTTTTCCCCAAAGTTATTCGCATTTCAGTCACTGATCACAATGTCACAGACTCATCCAGCGATGAAGATGAAGAACAAGACATGAATCTTTTTCGACGTCGAAGAATCATCAAAAGATTTGTTAATGAGATCAGAATTGTGCGTGTCAATGACAAGAAGAGACATAACAATCATGATAGAATGTGGCTTGGAACCTTTGACACTGCTGAAGAGGCAGCCATGGTTTATGATGAAGCTGCTATTAGATACCGAGGTGCTGATGCTGTCACTAATTTCATCAAACCACCTTTGAAAGATGAAAGTATGTCTGTTTCTGTGTCTATGTCTGTGTCTATTGATGGTGAAAATGTTGCGAGTTGTGCATGTGCTTCTCCCACTTCTGTTCTCGTGTTTAAGCCTTGGATGGAACCACTTTCTTTGGAAGAGACCTTCAAGGAAGAAGTATTCCATGGGTTGAATGGGTTGAACGAAGATACTTCTCTTGACACAGTGATGTATTGTGCAAGATTA 666 0.3829 TYYKTYILLFQKFSLSHVVVLFFFFFLTFGFYPVMEYEQKTITTKLVKSSSRFFPKVIRISVTDHNVTDSSSDEDEEQDMNLFRRRRIIKRFVNEIRIVRVNDKKRHNNHDRMWLGTFDTAEEAAMVYDEAAIRYRGADAVTNFIKPPLKDESMSVSVSMSVSIDGENVASCACASPTSVLVFKPWMEPLSLEETFKEEVFHGLNGLNEDTSLDTVMYCARL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00404 222 CDD AP2 109 144 IPR001471 GO:0003700|GO:0006355
Pste7g00404 222 Pfam AP2 domain 84 137 IPR001471 GO:0003700|GO:0006355
Pste7g00404 222 ProSiteProfiles AP2/ERF domain profile. 78 145 IPR001471 GO:0003700|GO:0006355
Pste7g00404 222 Gene3D AP2/ERF domain 83 146 IPR036955 GO:0003700|GO:0006355
Pste7g00404 222 SMART rav1_2 82 152 IPR001471 GO:0003700|GO:0006355
Pste7g00404 222 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 55 181 - -
Pste7g00404 222 SUPERFAMILY DNA-binding domain 107 144 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00404 Pste-Chr7 3887272 3889821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00404 33 199 AP2-EREBP Transcription Factor Family AT4G27950 35.652 3.50e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste7g00404 AP2 4e-07 CL0081