LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste7g00369	ATGGAAGAAGCCCTGCGACGTCTCAACGGAATGGGCCCTACTCAAGAGCCCGACACAGCCGCCGACCATCCCCACCCCAAAAAGCCCACCGCCAAGCGCGCCATCCGTGAGGCTCCCACCTCCGCTGCCGGTCCCATGCGCTACCGCGGAGTGCGCCGCCGCCCCTGGGGCCGGTACGCGGCTGAGATCCGCGACCCGCAGTCCAAGGAGCGGCGCTGGCTCGGCACCTTCGACACGGCTGAGGAGGCCGCCTGCGCCTACGACTGCGCCGCACGAGCCATGCGCGGCGTCAAAGCCCGCACCAATTTCGTCTACCCCGACACGGCCGCCGCCGCCGACCCCCATCTCTTCCAACCCTTCAACATCCCCAAGCACTGCCACGTCACCACCACCCGCTTCCCCCACCACACCAATTTAACCTCTTCGGATTTCTCCAACTCTTGCACCACTTACCCTAACCACAGCAACAACACTTCTCTTAACATGTTTCTCTTTCGTGATTTCCTCAACCCTTCTTCCCCCAATTTTCACACCAAACCCTTCAGTTACGTTAACCCTTCATCTTCTTCTCTTGAGAACAACTATTTTCAAGGTTGTTCTGTTGGCACCTCCAACACCCTTGGAACAGAAGTTCCTGAAGCCGTTGATGAAGACCTAGAGTTCTTCCCGCGTGAGTCTCCCGATTCTGGGTTGCTGGAAGAGATTGTTCACAAGTTCCTGCCGAAATCCAAGCCAAAGAACGAGGCTTTGAATTTGTCCCTCCCTGAATCCTCCTTTTCCCAACCAAAATTCGATCACAATGTAGTTGGCTCAAGTAGGGTTTCAAAGGTTGAAGGTTTTGCTGTTGCTTATGATTCTCCCATGCAGCAATTCGACCCTCTTCACGGTTTCAATGCCATGCAGGGTTTTGATAGAGACAACCACAGTCAGTTCATGATGAATCACTTTCCAGGGTGCTCCAACTTGGAGGAAATTCTTCAGTATCCAGAGTTTTTTAGTTCCTTTGCAGCCAGAATGCAAAATGCTTGA	1029	0.5423	MEEALRRLNGMGPTQEPDTAADHPHPKKPTAKRAIREAPTSAAGPMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGVKARTNFVYPDTAAAADPHLFQPFNIPKHCHVTTTRFPHHTNLTSSDFSNSCTTYPNHSNNTSLNMFLFRDFLNPSSPNFHTKPFSYVNPSSSSLENNYFQGCSVGTSNTLGTEVPEAVDEDLEFFPRESPDSGLLEEIVHKFLPKSKPKNEALNLSLPESSFSQPKFDHNVVGSSRVSKVEGFAVAYDSPMQQFDPLHGFNAMQGFDRDNHSQFMMNHFPGCSNLEEILQYPEFFSSFAARMQNA	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste7g00369	342	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	30	219	-	-
	Pste7g00369	342	PRINTS	Ethylene responsive element binding protein signature	48	59	IPR001471	GO:0003700\|GO:0006355
	Pste7g00369	342	PRINTS	Ethylene responsive element binding protein signature	70	86	IPR001471	GO:0003700\|GO:0006355
	Pste7g00369	342	ProSiteProfiles	AP2/ERF domain profile.	47	104	IPR001471	GO:0003700\|GO:0006355
	Pste7g00369	342	SUPERFAMILY	DNA-binding domain	47	104	IPR016177	GO:0003677
	Pste7g00369	342	MobiDBLite	consensus disorder prediction	1	43	-	-
	Pste7g00369	342	CDD	AP2	47	103	IPR001471	GO:0003700\|GO:0006355
	Pste7g00369	342	FunFam	Ethylene-responsive transcription factor 2	46	105	-	-
	Pste7g00369	342	Gene3D	AP2/ERF domain	46	105	IPR036955	GO:0003700\|GO:0006355
	Pste7g00369	342	MobiDBLite	consensus disorder prediction	20	34	-	-
	Pste7g00369	342	Pfam	AP2 domain	47	96	IPR001471	GO:0003700\|GO:0006355
	Pste7g00369	342	SMART	rav1_2	47	110	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste7g00369	Pste-Chr7	3506101	3507129	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste7g00369	1	242	AP2-EREBP Transcription Factor Family	AT1G24590	40.977	4.72e-41	144

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pste7g00369		AP2	6.2e-12	CL0081