LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste7g00306	AGACAGACACAAACCATGGCTGGTGCTACAAACTGGCTTACGTTTTCGTTGACTCCCATGGAAATGCTGAGATCCTCGGACTCTCTCTTTGCTCCTTACGACACTCCTCCCTCTCATTCCTCCTTCCTCGACAACTTTTTCCCCTCCAACAACGGGTGGACAGGTTCCAAGGTTATGATGGATTCTGAGAGTGAGAACCAAACACTAGCGGTGCCGAAAGTTGAAGATTTTTTCGACTCCCAAACCGAGAATCAGCAAGATGGTTCCTCGCTGACGCAAATTTATGAACATGGCTCTTCTGCTTCTGTGTACTTCACTGAGGAGCAAGATCTGAAGGCGATTCCTGGGTTGAAAGCGTTCTCTGGGACCAACTCAGAGCCCGAGTTGGATGACTCGGCCTCTAACAAGACCACTCCGGATGCACCCGCTGAGTTCGCCGCCGAGTCCGCCAAAGGAGCTTTGTCTTTACGTCAAGATAAAGCCGTTGCTGCGGTGGAGTTTGACACACCGAAGAAGGTTGCGCATTCCTTTGGCCAGCGAACTTCAATTTACAGAGGGGTCACGAGACACCGTTGGACAGGGAGATATGAAGCTCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCCAGGAAAGGGCGTCAAGGTGGATATGACAAGGAAGAAAAGGCTGCGAGAGCTTATGATTTAGCAGCTCTGAAGTACTGGGGACCATCAGCAACCACCAACTTTCCTATTTCCAATTATACAAAGGAATTGGAGGAGATGAAGCATGCAGGAAAGCAAGAATTTATTGCTTCACTGCGAAGGAAAAGTAGTGGGTTTTCAAGGGGAGCTTCTGCTTTCAGGGGCATCATCAACAGGGAAGATGGCAAGCAAGAATTGGCCGTGTCGCGGGAAACAAGGATCTATACTTGGGAACATTTGGCAACAAGTGAAGAGGAAGCAGCAGAGGCATATGACATTGCAGCCATTAAGTTCAGAGGTGCAGGAGCTGTCACTAATTTTGAAATGAGTAGGTACGACGTGAAAGCTATATTGAACAGCTCTCTTCCAGTTGGGGGGCTAACAAAACGCATCAAGCTTTCCTCAGAATCAGAGACCAAACCTCTAGTCAACACTGATCAGCAACCTCGGATCACGGTGGCGAGTAGCAGCATCAATTTCTCAGCCGTTCAGCCAGTTTCTGCTATACCCTATGGTTCTGCAAACACATGTTACCCCCACAACCTCTTCCACCATTTTCATCCCACCAATGCAGGAACTAGCACTGCAGATTCTGCTGCAACTGTGATGCCCAATGCAACTGCATTGACCATCCTACCACCACCAGCACCGGTTCCCGGGTTCTTCATATGGCCACACCAGTCCTTCTGA	1380	0.4913	RQTQTMAGATNWLTFSLTPMEMLRSSDSLFAPYDTPPSHSSFLDNFFPSNNGWTGSKVMMDSESENQTLAVPKVEDFFDSQTENQQDGSSLTQIYEHGSSASVYFTEEQDLKAIPGLKAFSGTNSEPELDDSASNKTTPDAPAEFAAESAKGALSLRQDKAVAAVEFDTPKKVAHSFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPSATTNFPISNYTKELEEMKHAGKQEFIASLRRKSSGFSRGASAFRGIINREDGKQELAVSRETRIYTWEHLATSEEEAAEAYDIAAIKFRGAGAVTNFEMSRYDVKAILNSSLPVGGLTKRIKLSSESETKPLVNTDQQPRITVASSSINFSAVQPVSAIPYGSANTCYPHNLFHHFHPTNAGTSTADSAATVMPNATALTILPPPAPVPGFFIWPHQSF	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste7g00306	459	PRINTS	Ethylene responsive element binding protein signature	184	195	IPR001471	GO:0003700\|GO:0006355
	Pste7g00306	459	PRINTS	Ethylene responsive element binding protein signature	320	340	IPR001471	GO:0003700\|GO:0006355
	Pste7g00306	459	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	71	372	-	-
	Pste7g00306	459	Pfam	AP2 domain	183	238	IPR001471	GO:0003700\|GO:0006355
	Pste7g00306	459	MobiDBLite	consensus disorder prediction	125	139	-	-
	Pste7g00306	459	MobiDBLite	consensus disorder prediction	118	140	-	-
	Pste7g00306	459	ProSiteProfiles	AP2/ERF domain profile.	282	338	IPR001471	GO:0003700\|GO:0006355
	Pste7g00306	459	ProSiteProfiles	AP2/ERF domain profile.	183	246	IPR001471	GO:0003700\|GO:0006355
	Pste7g00306	459	FunFam	AP2-like ethylene-responsive transcription factor ANT	182	248	-	-
	Pste7g00306	459	CDD	AP2	182	248	IPR001471	GO:0003700\|GO:0006355
	Pste7g00306	459	SUPERFAMILY	DNA-binding domain	283	340	IPR016177	GO:0003677
	Pste7g00306	459	SUPERFAMILY	DNA-binding domain	182	248	IPR016177	GO:0003677
	Pste7g00306	459	SMART	rav1_2	282	344	IPR001471	GO:0003700\|GO:0006355
	Pste7g00306	459	SMART	rav1_2	183	252	IPR001471	GO:0003700\|GO:0006355
	Pste7g00306	459	Gene3D	AP2/ERF domain	183	248	IPR036955	GO:0003700\|GO:0006355
	Pste7g00306	459	Gene3D	AP2/ERF domain	282	340	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste7g00306	Pste-Chr7	2851009	2857288	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste7g00306	58	459	AP2-EREBP Transcription Factor Family	AT5G10510	43.798	6.89e-99	305

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pste7g00306		AP2	1.6e-09	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste1g01406	1	4451049	4456241	Pste7g00306	7	2851009	2857288	PCT