Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00301 ATGGCTTCTCCGCCACCCTTAACGCTAAACGTCGTCGGATCAGACACTGACACATTCCCAACCGTTTCAAGCTCTCTAACGCCCCCGTCACCTCGCCGTTCCTCTCCGTTACAGAACCTCAGCCCCAGCATTCTGATTATCATAACGGTCCTCGCCGTCACCGTTATCGTCTCTCTCGCCCTCTGCTTCCTCCTCCGCCACCTCAACCGCCGCTGCCTCCGCCGCTTCTCCTCCTCCTCCGCTCCTCCCTCCGCCGCCGCCACGCCTATTTTCACCTCCAGCCGCCGCATCTCCCCCGAGATTCTCCACTCCTCCACCAACACCGCCTCCGTCATCGACACCCTCCCGCTCTTCACGTTCTCCTCCGTCACTCGGCGTTCTGCCGCCGCCGCTGACTGCGCCGTCTGCCTCTCCAAATTTCACAACCACGACCTCCTCCGCCTGCTTCCTCTCTGCTGCCACGCCTTCCACGCCGAATGCATCGACACCTGGCTCCAGTCGAACCTCTCGTGTCCGTTATGTCGCTCCGCCATCGTCGCCGAGGACTCCGACCTCGCGAAAATCCTCCTTCCGCCGTCCTCCGCCGCCGGAAGCAGCGACAGCTTCCGCCTCGAGATAGGAAACATCAGTCGCCGGGCAAATGACGGCGGCGCCGAAGGCGCCGCCGCCCGCGGTGGTTCACGGTCGCGGTCCTATTCCATTGGATCGTTCGAGTATTTGATCGACGACGAATCGGAGGTTCCCTACAGCCACGCTCGCCGGAGAAGCGGTGATGATACGAAGGAGTTTCCGGCTCCGGCGGGTGCACCGGCGAGTCAAAATGAAGCCAGTCTCGCCGGCGAAGTTGCCGGCGTTAGAAGCTGGCTTAAGGATTACATGGATAGGTTTTCCGCTTCTATTTCGTCGCGAACGGCGTCGTTTCGAAGCTCTGGAAGGTTCTTCAGCGGTGGCGGGAGTAGTCGCCGAAGCGACGTCGTTCCGGTCGCTGCGGAATACGATTTGGAGGGAAACAGAATCGGCGAAGAGATCAGTGAAATGTTTCGCTGGCTTTCAGGGGTATGA 1062 0.6073 MASPPPLTLNVVGSDTDTFPTVSSSLTPPSPRRSSPLQNLSPSILIIITVLAVTVIVSLALCFLLRHLNRRCLRRFSSSSAPPSAAATPIFTSSRRISPEILHSSTNTASVIDTLPLFTFSSVTRRSAAAADCAVCLSKFHNHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSAIVAEDSDLAKILLPPSSAAGSSDSFRLEIGNISRRANDGGAEGAAARGGSRSRSYSIGSFEYLIDDESEVPYSHARRRSGDDTKEFPAPAGAPASQNEASLAGEVAGVRSWLKDYMDRFSASISSRTASFRSSGRFFSGGGSSRRSDVVPVAAEYDLEGNRIGEEISEMFRWLSGV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00301 353 CDD RING-H2_EL5-like 132 175 - -
Pste7g00301 353 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Pste7g00301 353 Pfam Ring finger domain 132 175 IPR001841 -
Pste7g00301 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 36 251 - -
Pste7g00301 353 MobiDBLite consensus disorder prediction 1 36 - -
Pste7g00301 353 SMART ring_2 133 174 IPR001841 -
Pste7g00301 353 FunFam E3 ubiquitin-protein ligase ATL6 99 181 - -
Pste7g00301 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 180 IPR013083 -
Pste7g00301 353 MobiDBLite consensus disorder prediction 249 275 - -
Pste7g00301 353 MobiDBLite consensus disorder prediction 9 36 - -
Pste7g00301 353 SUPERFAMILY RING/U-box 116 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00301 Pste-Chr7 2815908 2816969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00301 21 204 C3H Transcription Factor Family AT4G28890 34.574 5.29e-23 97.4