Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00276 ATCAATTTGTGAAGGATATGAGGTTAGCAAGAATTAAATCAGCCATGTTTGTTTCTGGAGCACCTAAGAGATCATCATCAAGAATATGCATAAATTGGGCAAATGGCAATTGTATGTACGGAGAAGATTGTTGGCATTTACATTCTTGGAGTGACGGCATCTTGACTAAATTTCACGGGAACAATAAAAAACCCACAAGATTTGTTTGGTGGACAACACCTCCAAATGATTTTGTGAAAATCAACTGTGATGGAGTCTTCTCAACTTATCATGAAATAAATATGGCTTCTGCTGGTGGAGTTGTTAGAGATTGGGAGGGTGCGTTTGTCAGTGGCTTCTCTACTTTATTGAATAAGTGTGACACAGTGGTAGAAGCTGAATTATTGGCCATCAAGATTGACATTCAAGTAACTCTATCTATGGGTTTTAGAAAGTTGGTTGTTGAAAGTGATTCCTACACAGCTATACAACTTATTAATAATGGAGTCCATATAGGTCACCCTTATCATGCAATTGTCTCTTCCATCCTTGTGATTGATAACATGGCAGATGCTTTTTGCTACAATCACGTCTTCAGAGAAACCAACTCAGTGGCAGATGGGTTTGCCAAACATGGATTATCATTGACTCTTAGATCTGGCATTAAGCTTTTTTCATATCCTCCTACATTCAGTTTAAGCTCTTTGCGCGCGGATGAAGTGGGAGTAATATATTCTCATCAATTCGTGATGGATATGAGTTTAGAGAGAATTAAACCAGCCATGTGTGTTTCTAGAGCACCTAAAATATGCATGAATTGGGCAAATGAAAATTGTACGTATAGAGAAGATTGTTGGCATTTACATTCTTTGAGTGAGAACATCTTGACTAAATTTCATGGGGACAATCGAAAACCCATGAGATTTTTTTTGTGGACAGCACCTCCGAATGAT 932 0.3788 MRLARIKSAMFVSGAPKRSSSRICINWANGNCMYGEDCWHLHSWSDGILTKFHGNNKKPTRFVWWTTPPNDFVKINCDGVFSTYHEINMASAGGVVRDWEGAFVSGFSTLLNKCDTVVEAELLAIKIDIQVTLSMGFRKLVVESDSYTAIQLINNGVHIGHPYHAIVSSILVIDNMADAFCYNHVFRETNSVADGFAKHGLSLTLRSGIKLFSYPPTFSLSSLRADEVGVIYSHQFVMDMSLERIKPAMCVSRAPKICMNWANENCTYREDCWHLHSLSENILTKFHGDNRKPMRFFLWTAPPND 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00276 305 SUPERFAMILY CCCH zinc finger 20 46 IPR036855 GO:0046872
Pste7g00276 305 CDD RNase_H_like 75 198 IPR044730 -
Pste7g00276 305 Pfam Reverse transcriptase-like 76 199 IPR002156 GO:0003676|GO:0004523
Pste7g00276 305 Gene3D - 72 202 IPR036397 GO:0003676
Pste7g00276 305 SMART c3hfinal6 18 44 IPR000571 GO:0046872
Pste7g00276 305 SMART c3hfinal6 252 278 IPR000571 GO:0046872
Pste7g00276 305 PANTHER OS05G0353850 PROTEIN 55 231 - -
Pste7g00276 305 SUPERFAMILY Ribonuclease H-like 72 203 IPR012337 -
Pste7g00276 305 ProSiteProfiles Zinc finger C3H1-type profile. 252 279 IPR000571 GO:0046872
Pste7g00276 305 ProSiteProfiles Zinc finger C3H1-type profile. 18 45 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00276 Pste-Chr7 2559127 2562459 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00276 65 202 Glycoside Hydrolase AT2G33160 28.058 8.54e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste7g00276 RVT_3 7.1e-23 CL0219