Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00229 ATGGCTTCGATGAAGAAGAGTGGTTTGCTCCTATGGTTATGTGGAATGCATTTGTGCTTCTTGCTTGTTGGTTGCACTTCAAGGACTCCTAGGAGTTTAAGGGAGATCAACAGTCTTGTCAATCATTCTGAAGTTAAACTAAATGTACAAAATAATCAGGTTATTATGGAAAATGGAATCATTCGTGTCACTTTCTCAAAACCAGAGGGCACTATTCTTGGAATATCATATAATGCAATAAATAATGTGCTTGAAGCTCGCAACAAATTTAACAATAGAGGGTATTTTGATATTGTTTGGAATAAACCAGGAAGCACTTCAAGACTTTGGGGATATATTTTACGGAAAGGTAGTTCAGGATTATACATATATGCTATATTTGAGCACCCAGAACATTTTCCTGCTCTGGAGATTGATCACATTAGGATCGTTTTCAAGCTACAAGAGAATAGATTCCACTACATGGCTATAGCAGATGATAGGCAACGAGTCATGCCAACTTCAGAAGATAGATCAATTGGGCAACGCCTTGATTATGATGAAGCAGTTCTAATAACCAACCCTAGTAACCCAGAACTTCAAGGAGAGGTTGATGATAAATACCAATACTCTTGTGAGAACAAAGATAACAAACTTCATGGGTGGATGGACTTGGGCTCCAAATCCAATGAATCTGTGGGCTTTTGGATGATAACACCAAGTAATGAGTTTCGCAGTGGTGGCCCAATTAGGCAAGGCCTCACTTCACATGCTGGCCCTATTACACTCAATATACTTCATACCACTCACTACTCAGGGAAGGAGGTAACCATGGCAATAAAAGAAGGTGAATCCTTCAAGAAAGTGTATGGTCCTGTTTTTGCTTATCTTAACTCGGTTGCTAGTGGCCATAATTCACAGGCCCTATGGAGTGATGCTGTAGAACAGCTAGCTGAAGAAATAAAAAGTTGGCCTTATGATTTCCCTAAATCAGATGATTTTCTCCCAGCCAGTAAAAGGGGAAAAGTGGAAGGACAATTACTAGTCCAAGACCGACACATTAATGGAAGAGAATTTGTATATGGAAAAAATGCTTATGTTGGTTTGGCTCTGCCTGGAGATTTGGGATCATGGCAAAGACAAAGCAAGGGATACCAATTTTGGACTGAAGCTGACAAAGTGGGCCATTTCACAATTGAAAATATTGTACCAGGAGACTATGATTTATATGCATGGGTTCCTGGAGTTTTTGGAGAATATAAATACAAAACTACTATAATCATCACACCAGGAGGTATAATCCAATTGGATTCACTAATATTCAGTCCTCCAAGAAATGGACCAACCATATGGGAAATTGGCATTGCAGATCGTTCTGCTGCAGAATTCTATGTTCCAGAACCTTATCCTAACCTCATCAATCGATTATACATTGGCAAACCAATACACAGGTTTAGACAATACGGATTGTGGAGGCGTTATGTTGAGTTATACCCAAACAAGGACCTTGTTTACAATGTTGATGTGAATGATTACACCAAGGACTGGTTTTATGCTCAAGTTCCCAGGAACATAGGAAACAACACATATCACCCCACAACATGGGAGATTAAATTCCATCTCCCATCTGTTATAAGTGGCACCTACACTCTGCAACTTGCCTTGGCCTCAGCTACAAGTTCTAACTTGGTGGTTTGGTTCAATGACCCTGTGGCTCGTTCTCCACACTTCTCTAGTGGATTGGTAGGTAGAGATAATGCCATAGCAAGACATGGCATCCATGGATTGTACTGGCCTTACAGCATTGAAGTGCCGAGCCATCAATTGGTGGAAGGAACCAACACCATATATTTGAGGCAAGCAAAAGGTCTAAGTCCTTTCCAAGGTGTTATGTATGATTACATCCGTTTTGAAAGGCCTCAAGCTTGA 1908 0.403 MASMKKSGLLLWLCGMHLCFLLVGCTSRTPRSLREINSLVNHSEVKLNVQNNQVIMENGIIRVTFSKPEGTILGISYNAINNVLEARNKFNNRGYFDIVWNKPGSTSRLWGYILRKGSSGLYIYAIFEHPEHFPALEIDHIRIVFKLQENRFHYMAIADDRQRVMPTSEDRSIGQRLDYDEAVLITNPSNPELQGEVDDKYQYSCENKDNKLHGWMDLGSKSNESVGFWMITPSNEFRSGGPIRQGLTSHAGPITLNILHTTHYSGKEVTMAIKEGESFKKVYGPVFAYLNSVASGHNSQALWSDAVEQLAEEIKSWPYDFPKSDDFLPASKRGKVEGQLLVQDRHINGREFVYGKNAYVGLALPGDLGSWQRQSKGYQFWTEADKVGHFTIENIVPGDYDLYAWVPGVFGEYKYKTTIIITPGGIIQLDSLIFSPPRNGPTIWEIGIADRSAAEFYVPEPYPNLINRLYIGKPIHRFRQYGLWRRYVELYPNKDLVYNVDVNDYTKDWFYAQVPRNIGNNTYHPTTWEIKFHLPSVISGTYTLQLALASATSSNLVVWFNDPVARSPHFSSGLVGRDNAIARHGIHGLYWPYSIEVPSHQLVEGTNTIYLRQAKGLSPFQGVMYDYIRFERPQA 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00229 635 CDD RGL4_C 444 631 - -
Pste7g00229 635 Gene3D - 45 300 IPR014718 GO:0030246
Pste7g00229 635 Pfam Polysaccharide lyase family 4, domain II 356 426 IPR029413 -
Pste7g00229 635 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Pste7g00229 635 Gene3D - 328 430 - -
Pste7g00229 635 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 112 634 - -
Pste7g00229 635 Pfam Rhamnogalacturonate lyase family 112 197 IPR010325 -
Pste7g00229 635 Pfam Rhamnogalacturonate lyase family 45 107 IPR010325 -
Pste7g00229 635 SUPERFAMILY Galactose mutarotase-like 51 292 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pste7g00229 635 SUPERFAMILY Galactose-binding domain-like 439 631 IPR008979 -
Pste7g00229 635 CDD RGL4_M 332 413 IPR029413 -
Pste7g00229 635 CDD RGL4_N 45 292 - -
Pste7g00229 635 Pfam Polysaccharide lyase family 4, domain III 442 629 IPR029411 -
Pste7g00229 635 SUPERFAMILY Starch-binding domain-like 329 430 IPR013784 GO:0030246
Pste7g00229 635 Gene3D - 439 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00229 Pste-Chr7 2158303 2166639 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00229 40 633 Polysaccharide Lyase AT1G09890 51.501 0.0 649