Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00202 GTTAGGTCATAGTGTCACAGTTTCATTTCCCTTGTGCAGCAGAGAAAGAAGAAGAAGGAAGAGAGAGAGAGCTATGGAGCTTTCTCAACTTGGTTTCCTAGATGAGTTAGTAGCTCCAAGAAGAGACACATGGAACACTTTGTCCACTGGCTTCTGTGAGCCATTCCCTAACACTTGGATGTTTGATACTTTCCTTGAAAACCCTTCTTTGGCCACTTCAAGCTCTCTTTTTGGTGCATTTTCAGCACCATTAGACCGCAGATTTGAATGCCCTTATGAAGTTTCACCATACCCTTTTGGTGATGGGTTCACAATGCCATTGCCAGAGCTTGACCCTGCCAATGATGACCCTCCACCACTTCCACCATCACTTGAGGATGAAGACATTGGCTTTCATGACAATAACAACAACAAAGACAACAACTTTGAAGAAAATAAGAGTTTGTGCAAAGTTAAGGAGCAATGCACAGAGATTCCTGTGTTTAACATAGGCATGTGTGATGATGGATTTGGAGAGAGAAAACCCAAGTCCAAGAAGCTTGAAGGACAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCCAAGATCAGTAAGATGGATAGGACCTCTATTCTTGGGGATACCATAGACTACATGAAAGAGCTTTTGGAAAGGATTGGTAAGTTGCAAGAGGAGGAGGAGGGCACAAGTAATATAAATTTGTTGGGGTTTTCAAAGGAACAACAACTCAAGCCAAATGAAGCAATAGTAAGAAACTCCCCCAAGTTTGATGTTGAGAGGAGAGACCAGGACACCAGGATCAGCATCTGCTGTGCCACAAAGCCTGGATTGCTACTATCAACTGTGAATACCTTAGAGGCATTAGGCCTTGAGATTCAGCAGTGTGTTATAAGTAGCTTCAATGACTTTTCAATGGAAGCATCTTGTTCTGAGGTAGAACAGAGAAATTGTATTAACCCTGAAGAGATAAAACAAGCTCTATTCAGAAATGCTGGCTTTGGTGGGAAGTGTCTCTAGGAGAAAGTTGGAAAATAGCTGTAACAATTTGCAGATGGTGTAGAAGAGGCAACTTTCCTTCTTAAGATTGTAATCCGAGGAATTAGGGAAGTAGAAGTTTTAATGAAATTCAGAATAAGTTGGCTTTGATTAATGATTTCCATCTTAAAGCCTCAACCTGTGTTTTAACATATATTAGGGGTGCTATCCTTTAGGGCATGCTGCAATTTCACCTTTTGAAAAAAGTGTTCTGTTTTAAGAAGTGGTTTATAATGAAGGAGAATTATTGCAAGACCCAGAATTAACTGGAATCAAATTGTTTTACCATGGATTCCTAAGTAAGTATGCTGTTGCTTCAAAATTTATTTTCTGGAACCTTAGAACAATAATTGTGTGCTCTATGTTTCCTGTTGTCCAGGCTGTGACCTCCACCACCAACCAACCGGATGTACAATTTTGTATGAGTCCTGGTCTCTCTCAGATATGTATCACAATTATTGTAAACTGTTGAAAGAATTG 1564 0.4054 MELSQLGFLDELVAPRRDTWNTLSTGFCEPFPNTWMFDTFLENPSLATSSSLFGAFSAPLDRRFECPYEVSPYPFGDGFTMPLPELDPANDDPPPLPPSLEDEDIGFHDNNNNKDNNFEENKSLCKVKEQCTEIPVFNIGMCDDGFGERKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEEGTSNINLLGFSKEQQLKPNEAIVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVISSFNDFSMEASCSEVEQRNCINPEEIKQALFRNAGFGGKCL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00202 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 220 IPR036638 GO:0046983
Pste7g00202 330 CDD bHLH_AtAMS_like 161 232 - -
Pste7g00202 330 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Pste7g00202 330 Gene3D - 151 223 IPR036638 GO:0046983
Pste7g00202 330 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 115 325 - -
Pste7g00202 330 CDD ACT_UUR-ACR-like 257 297 - -
Pste7g00202 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Pste7g00202 330 SMART finulus 164 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00202 Pste-Chr7 1982729 1984644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00202 9 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 48.246 1.18e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste7g00202 HLH 6.9e-10 No_clan