LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste7g00163	GAGAGAGAGAGAGAGAGAGAGAGTTGGTGTGTGGTGGAACAGAGAATACGAAGAGGGTTGTTGGCTTTGAAGTAGTGGGAACAAAGGGAAACAAACCCCATTATATTATCACACTGTTTCTTCCTTCATTTCAATGCTGGGGACTTGTTAACTGGAAGTCTTTGTGTGATGTTATGTGATATTGGGACATGGAGAGGGTTGCAGAGCCAAAGTTACTTCCTCGAACCTTGCCCATCCTGGTTGAGGTATCAAACTCGCACACAGCTTCAGCAAGAGAGTCAGGTCAGAGACTAAATCGCCAGGAGGTTTTGACTGTTGGTGGGATTTCTGCAAGAGAAGTGCATCAATTGTCCAAAACAAGGGATGTGCATGTTCCTATTACACATCTGGCCTCCATCAGAGAAATGGCTCAGTTAACAAATGCTCGGATATATTTGGTGCGAGAAGATACGGGATTTGATACTCGATCCTCTGGAGAATCCCTCACCTTTGAGCCTGCCATGACATGGAAAGGAAAGACCTCACCAGAAGAAGCCGAAGAATTTGTGCCTGATGTTGAGACATTGAAGGGAAGCAGTGATTCATTTGAGGATGGTGATCCAAGTTTATTTGCTGGTGCTAGTCATCCACCAGAACCTGTTGATACAGATCTTATGAGAACAGTTTATGTACCAATAGGTCAAAACAAATCCGAGGCTGCATGCTTAATTAAAAACATGCCCACGAAGGGTCCTTTCCTGGAAGATCTCTCAATTTGCGTGCCTGCAAAGAAACCAATCCCAGCTGTTCTTTCCCCTCAGGAAAGTCTGGTTGATGAGCTAAATGGCATAGGGAACTTATCATTTTTGGGTCCTCGGGCATCGCAAAATACTGAGAACTCTTTCCTCCCTCCGGATGCTGAGGAAAAGGAATGTGTTTGGGATGCTTCTTTGCCTCCTAGTGGCAATGTCAGTCCACTTAGTAGTATTGATAGCACCGGTGTTGTCACTGCAATGAGCATTGTTAATAGTTGTGCTAGTACATATCGGAGTGATGCAATGACTAGTGATGGCATGCTTAGTTTAGACAGGAACTGTGATAGTACTAAAGGGAGTGTAAGGGGGGATTCACTAGAGAGTGCTAAAACTAGTGCTAGTCGGCCAAGTGATAGCAGTGGCATCAGCGATGACAGCAACTGGAGCAACATTACTGGTAGTGCCAATAAGCCTCACAAGGGAAATGATCCTAGGTGGAAGGCTATCCTAGCCATCCGGTTACGGGATGGGATTTTGGGCATGAGTCATTTTAGGTTACTCAAAAGACTTGGATGTGGTGATATTGGAAGTGTATATCTCTCGGAGCTGAGTGGAACTCGGTGTTATTTTGCAATGAAAGTTATGGATAAGGCATCCCTAGCAAGTAGAAAGAAGCTGACTAGAGCACAGACAGAGAGGGAGATATTGCAGTTGCTGGACCATCCATTTCTACCAACTTTATATACGCATTTTGAGACTGACCGATTCTCGTGTTTGGTAATGGAATATTGTCCGGGAGGTGATTTGCACACTTTAAGGCAGCGGCAACCTGGGAAACATTTCTCAGAATATGCTGCACGTTTTTATGCTGCGGAGGTCCTGCTTGCTCTTGAATATCTTCACATGCTTGGAGTTGTGTATAGAGACCTCAAACCCGAAAATGTGTTGGTCCGAGATGATGGACACATAATGTTATCAGATTTTGATCTTTCCCTGAGATGTGCTGTTTCACCTACACTTATTAGAACTTCTTATGATGGTGACCCATCAAAACGGGTTGGTGGTGCATTCTGTGTTCAACCTGCGTGTATTGAGCCATCATCAGTGTGCATCCAACCTGCGTGTTTTATTCCCCGGTTATTTCCTCAGAAAAACAAAAAGTCACGGAAGCCAAGAGCTGATCCTGGGTTGCCATCCAGCACACTTCCAGAGCTTGTTGCTGAGCCTACTCAAGCTCGATCTATGTCCTTTGTTGGCACTCATGAATACCTTGCTCCAGAAATTATCAAAGGAGAAGGTCATGGAAGTGCAGTTGATTGGTGGACATTTGGAATTTTCTTGCATGAGCTGTTATATGGTAAGACCCCTTTCAAAGGGTCAGGAAACCGTGCTACGCTTTTCAATGTAGTAGGTCAGCAGCTCAAGTTTCCTGAATCACCTGCGACCAGTTATGCCAGCAGGGATTTGATCCGTGGATTGCTAGTGAAGGAGCCACAGCATCGTCTTGGGGTTAAAAGGGGTGCAACTGAAATCAAGCAGCACCCCTTCTTTGAAGGCGTGAACTGGGCGTTGATTAGGTGTAGCACACCACCAGAAGTACCCAGGCCAGTGGAAAATGAACTACCAGGGAAGGTTGGAGTTGGACCAGTTGATCCTGTTGGGGTTGGCAGCACTAGTAAGAGGATAGTAGGTACTGACATGAAGTCTGGGGGTAAATATCTGGACTTTGAGTTCTTTTAGTTTGGATTCTTCAATCTACTTTTTATTATTGTATTTTCCATTCTCAGTCATTTCATGGGTGCTGCCCAGCGTTACCATGTTATTTCGTCTTACCTGCCTTTTAGTAGTAAAAGTCCATTTCAGTTGGAAATATGATACCTCAACTTTAGATTAGGTTCTTCTCCTTGTCTGATCCCGTGAATCCTATGGATAATCCATAATGTAGTGTTTCTATACAGAATTTAAATACCTCTCATGAGAATTATAATCTTTCTACATTTTTGGGCAAGCCTTTT	2749	0.4423	MERVAEPKLLPRTLPILVEVSNSHTASARESGQRLNRQEVLTVGGISAREVHQLSKTRDVHVPITHLASIREMAQLTNARIYLVREDTGFDTRSSGESLTFEPAMTWKGKTSPEEAEEFVPDVETLKGSSDSFEDGDPSLFAGASHPPEPVDTDLMRTVYVPIGQNKSEAACLIKNMPTKGPFLEDLSICVPAKKPIPAVLSPQESLVDELNGIGNLSFLGPRASQNTENSFLPPDAEEKECVWDASLPPSGNVSPLSSIDSTGVVTAMSIVNSCASTYRSDAMTSDGMLSLDRNCDSTKGSVRGDSLESAKTSASRPSDSSGISDDSNWSNITGSANKPHKGNDPRWKAILAIRLRDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRTSYDGDPSKRVGGAFCVQPACIEPSSVCIQPACFIPRLFPQKNKKSRKPRADPGLPSSTLPELVAEPTQARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVENELPGKVGVGPVDPVGVGSTSKRIVGTDMKSGGKYLDFEFF	761

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste7g00163	761	Gene3D	Transferase(Phosphotransferase) domain 1	450	518	-	-
	Pste7g00163	761	Pfam	Protein kinase domain	596	699	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste7g00163	761	Pfam	Protein kinase domain	367	518	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste7g00163	761	Gene3D	Transferase(Phosphotransferase) domain 1	594	716	-	-
	Pste7g00163	761	FunFam	serine/threonine-protein kinase D6PK-like	594	717	-	-
	Pste7g00163	761	MobiDBLite	consensus disorder prediction	291	339	-	-
	Pste7g00163	761	SUPERFAMILY	Protein kinase-like (PK-like)	347	720	IPR011009	-
	Pste7g00163	761	PANTHER	FLIPPASE KINASE 1-RELATED	106	721	-	-
	Pste7g00163	761	FunFam	serine/threonine-protein kinase D6PK-like	450	517	-	-
	Pste7g00163	761	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	487	499	IPR008271	GO:0004672\|GO:0006468
	Pste7g00163	761	SMART	serkin_6	366	699	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste7g00163	761	CDD	STKc_phototropin_like	364	718	-	-
	Pste7g00163	761	ProSiteProfiles	Protein kinase domain profile.	366	699	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste7g00163	761	MobiDBLite	consensus disorder prediction	290	343	-	-
	Pste7g00163	761	FunFam	Serine/threonine-protein kinase D6PK-like	364	449	-	-
	Pste7g00163	761	Gene3D	Phosphorylase Kinase; domain 1	364	449	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste7g00163	Pste-Chr7	1453040	1457938	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste7g00163	1	761	AGC Kinase Gene Family	AT2G44830	66.000	0.0	948

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Pste7g00163		Pkinase	1.1e-36	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste7g00163	7	1453040	1457938	Pste7g00163	7	1453040	1457938	ECH
	Pste7g00163	7	1453040	1457938	Pste5g01001	5	6590235	6595478	PCT