Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00080 TACAAGAGACATGTTGGACTATGAATGGGGAAACCCGTCCACGATAATGCTCACCGGAAATGAGGACGCCGCCACCGGGGCTTCCGACCAAAGCCACCGTCAAATCTTCGACCACTACGCCTCTCACACGCTCATCCCCGAACACTTCCTACACGCGCCAACGCACTCGACAGCCACAACCGCCGCCCCACCGTCGATTTCACCCACCCCGCTTCAACCACCAACCCCACCACCACCACCACGCCTTCTTCGACCCACGCGCCTTCCACGGCGCGTCCCCCTACATACCCCCTCCCCTTCCATGCTCTCCCTTGACCCGCTGCCCCACGTCAACGCACCCAACTGCGGGCCTGGGCCTGCCCATGGGCCCGGCCCAGGCCCCGGCGGGCTTCTCCTTGTCCCCAAGTCCGAGGATGTCGGCCGGCCCATGGACTTCGTCGGCTCACGAATTGGGCTGAACCTCGGTGGTCGTACCTATTTCTCATCCTCCGAGGATGATTTCGTGAGCCGACTCTACCGTCGGTCTAGGCCTGCCGAACCGGGTTCGACAGCTTCGTCGAACTCGCCTCGCTGCCAGGCTGAGGGATGCAATGCTGATCTGTCTCAGGCCAAGCACTACCATCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATTGCCGCCGGGTTGACTCAGCGATTCTGCCAACAATGCAGCAGGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCATAATCGCCGCAGAAGAAAAACTCAGCAACCAACCCAAGAAATTCAGAAATCTCAGCCGTCTTTGGATAATGTTGCAAGATCTCCACCTGACTCCGGAGCTCAGTCGTCGTCGTCAGTGACGGTGGCAGTGTCCCCGCCGGACTATTTCCGGCAGAGGCCATACCAAAGCACAAACCCTTCCTCGACTTCGAGCTCACTGTTTTTCTCAAGCGGGTAATGCATGTTGGAGCAGTTTAATTTGCATGGCTAATTAATATTTGCAAGGAATTAACGGAGGAGCGTCAACAATAATATATAGTGAACTACTTCCCCCTGTAACTCCCAATTTAATTTCAAAACTTTTATTCTGGCGTTATTAATTTGTACGAATTATGATTTAAATCATCTATGTTAATGTTAATCATCCTTGTTAATCATCTTCTGTATTTAATATTTGTGTTAATTATTAATGGCCCCCTTTGGGTGGTACTAGGCATGTAGCCATAGCAAATGGAATTCTGCGCATTGGCCCC 1286 0.5311 MLDYEWGNPSTIMLTGNEDAATGASDQSHRQIFDHYASHTLIPEHFLHAPTHSTATTAAPPSISPTPLQPPTPPPPPRLLRPTRLPRRVPLHTPSPSMLSLDPLPHVNAPNCGPGPAHGPGPGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGSTASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQEIQKSQPSLDNVARSPPDSGAQSSSSVTVAVSPPDYFRQRPYQSTNPSSTSSSLFFSSG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00080 326 ProSiteProfiles Zinc finger SBP-type profile. 185 262 IPR004333 GO:0003677
Pste7g00080 326 FunFam Squamosa promoter-binding-like protein 14 179 249 - -
Pste7g00080 326 Pfam SBP domain 188 261 IPR004333 GO:0003677
Pste7g00080 326 MobiDBLite consensus disorder prediction 63 83 - -
Pste7g00080 326 MobiDBLite consensus disorder prediction 53 126 - -
Pste7g00080 326 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 170 317 IPR044817 GO:0003677
Pste7g00080 326 MobiDBLite consensus disorder prediction 254 326 - -
Pste7g00080 326 Gene3D - 178 249 IPR036893 GO:0003677|GO:0005634
Pste7g00080 326 MobiDBLite consensus disorder prediction 266 326 - -
Pste7g00080 326 SUPERFAMILY SBT domain 186 266 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00080 Pste-Chr7 681111 683479 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00080 128 235 SBP-box Gene Family AT1G02065 75.000 4.97e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste7g00080 SBP 4.7e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g00080 7 681111 683479 Pste7g00080 7 681111 683479 ECH
Pste7g00080 7 681111 683479 Pste5g02036 5 12996246 12997276 PCT