Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00022 ATACTCACACTGCGCACGGTTTCTTCTCCATACTTGTCCAGAAGAAGAAAGATCCGAAAATTAACATTCTCTCCCTCTCTTATAGCAAGCTTTTTAAGCATATTTCTGGGGTTTGTTCCCTTTTCCTTCTTTAGGGTTTTCTTGGGGAAAAAAGGGAAAGAAGTAATTAGAAAAAGAAGAAAAAGCAAAGACACTAACATGGGAAGGGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATTAATCGCCAGGTAACTTTCTCCAAAAGGAGAGCTGGGTTACTCAAGAAAGCACATGAGATCTCTGTGCTCTGTGATGCTGAAGTTGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACTGATTCTTGCATGGAGAAGATACTGGAACGCTATGAAAGGTACGCGTATGCTGAGAGACAACTTGTTGCAAATGATTCTGAATCACAGGGAAATTGGACCATTGAGTATACTAGACTCAAGGCAAAGATTGACCTTTTGCAGAGAAACCATAGGCATTATATGGGAGAAGATTTAGGTACAATGAGCCTCAAAGAGCTTCAGAGTCTGGAGCAACAGTTAGACACTGCTCTCAAACAAATTCGTACCCGCAGAAACCAACTCATGTACGAGTCAATTTCTGAGCTTCAGAAGAAGGAGAAAGTGATACAGGAGCAGAATAACATGCTTGCAAAGAAGATCAAAGAGAAAGAGAAGGTTGCAGCACAGCAGGCACAATGGGAGCATCCAAACCACGGAGTTAATGCATCATCATTCATGCTACAACAGCCACTTTTGAACATCGGTGGCAATTACCGTGAGGAAGCACCAGAAGTAGGAAGGAATGAACTTGATCTGACTCTGGAACCATTGTACACCTGCCACCTTGGATGCTTTTGAGAACTTTGTTAGAAGTGGATGATATCATCGAACTAAGTGATGATGCATATGACAACATATTTATATGCCTCTATGTTTTGTGGTTTTCTCTACTCTGAAGACATCAATATATGTTATGTGTTGTAAGTTTATAGCTTGATTACAAAGCTAGGCTTTCTAATTAAGTCCAAGCTTGCTATTTATTGTCAAAAGACATGTCACGTATGATGAAATTTGAA 1130 0.4035 ILTLRTVSSPYLSRRRKIRKLTFSPSLIASFLSIFLGFVPFSFFRVFLGKKGKEVIRKRRKSKDTNMGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYAYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGTMSLKELQSLEQQLDTALKQIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKEKEKVAAQQAQWEHPNHGVNASSFMLQQPLLNIGGNYREEAPEVGRNELDLTLEPLYTCHLGCF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00022 303 PRINTS MADS domain signature 69 89 IPR002100 GO:0003677|GO:0046983
Pste7g00022 303 PRINTS MADS domain signature 104 125 IPR002100 GO:0003677|GO:0046983
Pste7g00022 303 PRINTS MADS domain signature 89 104 IPR002100 GO:0003677|GO:0046983
Pste7g00022 303 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 76 123 IPR002100 GO:0003677|GO:0046983
Pste7g00022 303 ProSitePatterns MADS-box domain signature. 69 123 IPR002100 GO:0003677|GO:0046983
Pste7g00022 303 Pfam K-box region 150 238 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste7g00022 303 PANTHER SERUM RESPONSE FACTOR HOMOLOG 69 236 - -
Pste7g00022 303 Coils Coil 188 211 - -
Pste7g00022 303 ProSiteProfiles MADS-box domain profile. 67 127 IPR002100 GO:0003677|GO:0046983
Pste7g00022 303 Gene3D - 79 152 IPR036879 GO:0003677|GO:0046983
Pste7g00022 303 FunFam Floral homeotic protein APETALA 1 79 134 - -
Pste7g00022 303 SUPERFAMILY SRF-like 68 158 IPR036879 GO:0003677|GO:0046983
Pste7g00022 303 ProSiteProfiles K-box domain profile. 154 244 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste7g00022 303 Coils Coil 217 247 - -
Pste7g00022 303 SMART madsneu2 67 126 IPR002100 GO:0003677|GO:0046983
Pste7g00022 303 CDD MADS_MEF2_like 68 145 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00022 Pste-Chr7 206972 215493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00022 67 303 MADS-box Gene Family AT1G26310 63.780 1.59e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste7g00022 K-box 3.7e-30 No_clan