Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00020 AGCATAGAGCACAGAGCACAGAGCACAGAGCACAGAGCACAGAGGTAGCGCAACAACGTCAAGATGGGAGGCGGAGAGAAGAAGAAGAAAAATAAGAATGCAAAATCTGGGGGTTTTGAGTCACTGGGTCTGAGTCCGAATGTGTTCAGGGGAATCAAGCGCAAAGGGTACAAAGTGCCCACTCCGATTCAGCGCAAGACCATGCCCGTCATCCTCTCCGGCACGGATGTGGTAGCCATGGCTCGCACTGGCTCTGGAAAAACAGCGGCGTTTCTGATCCCCATGCTTCACCGGCTCAACCAGCATGTCCCTCAGTGTGGAGTCAGAGCGCTGATTTTATCCCCCACAAGGGACTTGGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGTGTTAGTTTGTTAGTCGGCGGAGACAGCATGGAGAGTCAGTTTGAGGAGTTGTCTCAGAACCCCGACATTATAATTGCAACTCCCGGTAGGCTCATGCACCATCTGTCTGAGGTTGATGACATGTCCTTGCGCAGCGTCGAGTACGTCGTTTTCGACGAGGCCGATTGTTTGTTTGGCATGGGTTTCGCCGAGCAGTTGCATAAAATTCTTTCTCAGCTCGGGGAGAATCGTCAGACCTTGCTTTTCAGTGCCACATTGCCCAGTGCCCTCGCTGAATTTGCCAAGGCTGGTCTCAGAGACCCTCGCCTTGTCCGTCTCGACTTGGAAACCAGAATTAGCCCTGACTTGAAGCTTGCCTTTTTCACTCTTCGTCAGGAGGAGAAGTATGCCGCTTTGCTCTATTTGATTAGGGACCATATTGCTTCTGATCACCAGACATTGATTTTTGTATCCACCAAACATCATGTCGAGTTTCTCAACCTCTTGTTTCGTCTAGAGGGTATCGATCCGTCCGTCTGTTATGGCGACATGGATCAGGATGCTCGTAAAATCCATGTATCCAGGTTTAGGGCTCGTAAGACAATGTTGTTGATTGTCACAGATGTTGCCGCACGTGGCATTGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTCCCCCCCAAGCCTAAAATATTTGTCCATCGAGTTGGAAGAGCAGCAAGGGCTGGTCGAACTGGTACTGCATATTCTTTTGTCACTCCTGAGGATATGGCTTACCTTTTGGATCTTCATTTGTTTCTTTCAAAACCAATCAAAGCTGCTCCCTCCGAAGAAGAGGTCTTGCGGGATAGGGATGGAGTAATGTCAAGAAATGACCAGGCAATGGCTAATGGACTAACCATTTATGGTCGTTTTCCACAAAAAGCCATTGACCTTGTTTCAGACAGAGTTAGGGAAATTATTGATACTTCTGCAGAACTGGAATCAATGCAGAGAACCTGTAAAAATGCATTTCGGTTATACTCAAAAACCAAACCCTTACCTGCGAAGGAGTCCATTCGAAGGGTAAAGGATTTGCCTCGTGAAGGGCTGCATCCAATGTTCATGAATGTGTTGGAAACGGGGGAGTTAACAGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACCATTTTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATCAACAGGGCCCTTCTGGCCAATGGGTCGATGTGATGAAAAGTAAAAGAGCCATTCATGAGAATATTATAAATTTGGTTCGTGAACAGCAGCAGTATAAGAGTAATAAGGAAGAGGAGGAAATTCAATTGGAAAGCACAGCACGTGGCTCTAAGAGAAAGCCACTAAGTTTCAAGGATGAGGATCACTACATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTTCAGTAAAAGCTAATGAAGACTTTGCTTCAAATAGATTGGAAGCAGCTGTCCTCGATCTAGTAGCAGATGATGGTGCTGGCATTCAGAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAGAAGTACATCAAATTAAACAACGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACTGAGAGTGGTGCAAAAACGAAGGCTACCAAGACCGGCATATATAAGAAGTGGAAAGAACGCTCTCATGGTAAGATATCTCTTAGAGGGACAAGTAATGATGGTGATCCTTGGGAATCAACAAGTGTGGCAGGATCTTACCAACGAGGCCGTAGGAATTTTAAAGGCAGCAAGAAGCAACATTCAATGCCCAATGCTCACGTGCGTTCAGAAATCAAGGATTTGGATCAAATTCGAAAGGAGAGGCAGAAACAAGCCAACAAGATTTCTTATATAAAGAGCAAGTCGACAAAGGGTAAAAAGTTTGGTAGAAATGGCAAAAAAAGAAAAGGCAAATAGAGTTTGTTTGAAGCTCTGGAAATTAATTAATTAATTAGTTAAGGGGAAAAGGTCTGCTATCAAAATTCTTGCGGGAGCATTTTATATTTTGGAGGGCCCAACTTATAGGAAAAGAGACTTTGTTTTATTTTTTCTTGGTTCCCCAACAAATTTTGTTCTAAGTAAATGATCCGTACACTTTTTGTTGTACATGTACATGGATCACTCCTGTGCACTTCCTTTTATCTTTGAAGTTCCCCTTTTGTGCTTTTGGTGTTTTGTTGGTATATTTCAATATTTAATTTGAAATAAATCACAAACATTAACGATTTTGATTAAGTTTATTTCAATCTACG 2702 0.4375 MGGGEKKKKNKNAKSGGFESLGLSPNVFRGIKRKGYKVPTPIQRKTMPVILSGTDVVAMARTGSGKTAAFLIPMLHRLNQHVPQCGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELSQNPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILSQLGENRQTLLFSATLPSALAEFAKAGLRDPRLVRLDLETRISPDLKLAFFTLRQEEKYAALLYLIRDHIASDHQTLIFVSTKHHVEFLNLLFRLEGIDPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKAAPSEEEVLRDRDGVMSRNDQAMANGLTIYGRFPQKAIDLVSDRVREIIDTSAELESMQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFMNVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWVDVMKSKRAIHENIINLVREQQQYKSNKEEEEIQLESTARGSKRKPLSFKDEDHYISSIPKNQHMEAGLSVKANEDFASNRLEAAVLDLVADDGAGIQKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKKWKERSHGKISLRGTSNDGDPWESTSVAGSYQRGRRNFKGSKKQHSMPNAHVRSEIKDLDQIRKERQKQANKISYIKSKSTKGKKFGRNGKKRKGK 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00020 767 Pfam DBP10CT (NUC160) domain 614 675 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Pste7g00020 767 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 679 - -
Pste7g00020 767 SMART ultradead3 35 242 IPR014001 -
Pste7g00020 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 372 IPR027417 -
Pste7g00020 767 Coils Coil 540 560 - -
Pste7g00020 767 SMART DBP10CT_2 614 676 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Pste7g00020 767 CDD DEADc_DDX54 16 221 IPR033517 -
Pste7g00020 767 Gene3D - 235 457 IPR027417 -
Pste7g00020 767 SMART helicmild6 269 354 IPR001650 -
Pste7g00020 767 Pfam Helicase conserved C-terminal domain 244 354 IPR001650 -
Pste7g00020 767 Gene3D - 3 223 IPR027417 -
Pste7g00020 767 MobiDBLite consensus disorder prediction 719 743 - -
Pste7g00020 767 MobiDBLite consensus disorder prediction 551 572 - -
Pste7g00020 767 MobiDBLite consensus disorder prediction 688 703 - -
Pste7g00020 767 Pfam DEAD/DEAH box helicase 40 207 IPR011545 GO:0003676|GO:0005524
Pste7g00020 767 MobiDBLite consensus disorder prediction 749 767 - -
Pste7g00020 767 MobiDBLite consensus disorder prediction 679 767 - -
Pste7g00020 767 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 231 393 IPR001650 -
Pste7g00020 767 CDD SF2_C_DEAD 242 363 - -
Pste7g00020 767 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 16 44 IPR014014 GO:0003724
Pste7g00020 767 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 47 220 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00020 Pste-Chr7 175588 182397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00020 3 387 Eukaryotic Initiation Factors Gene Family AT1G72730 32.300 5.49e-61 209