LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste7g00015	GACTGATTAATCTGCAACAATCTTGTATCAGTTGACACACGCGCTGGTAGTGTTGTGTTTGGTAGCATCAATGAAATTGGGAAGGAAACCAAAGCATGGATGCGTGATGAGTCTGTTTCCTTTTACTACACCTTTCTGATTCCTGAAAAGCACAACACCTTTTCTGCCCCTTCTCACGTGCTACGTATCCTCTCATCTAAATTCACTCTTTTTCCAATGTTTTTCACTTTCAGCTTCCTCTTCATTCCTCTGTGACTCAAACAGCATCAACCAAGTTAGTGTGGTTTTCTTTTCTATAAATGGTTGTCATGTCTTTGAGAAGCTCTTGAAATTTAAAACTTTTGTGGTGACAATTGATTCAGTTGAAGTAAAGAGAGTATGATGGCTTTGGAAACACTTTCTTCCAATGAGTTATCAAACTTCATTATCTATGACACTATCTCAGCATCTCCATTTATCAACCGTGACTCTCCAGAGGCTAGTTTTTTTGAAAGTTTTGTGAACTATCAGGAACATGAACCTGCATTTGATAGCACATTGAGGACCCGAAAACGCCAAGCTAGTGAGCCAGAAACCATTGGAAGGAAGCAGAATGTGGTGGGGGTGCAAAGTAGGAAGAAGAGGAGAAGAAAACCAAGAGTTTGCAAAAACAAAGAAGAGGCTGAGACACAAAGAATCACTCACATTACTGTGGAAAGAAACCGCAGGAAACAAATGAATGAGCACCTTGCTGTTCTTCGTTCTCTCATGCCTGAGTCCTACGTACAAAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGAGCTGGAGCATCTCTTGCAATCACTTGAAGCTAGAAAGCTGCAACTGCTACATCAAGAAGTGGCACAAAGCAATGAAAATAGTGCCATTTCCAAACTCATGCAACCCCCTTTTGCACAATTTTTTTTGTATCCTCAGTACACATGGTCCCAGACTCCTAACAAATACACATCAAAGACCAAAGCTACCATAGCTGATATCGAGGTCACTTTAATTGAGACCCATGCAAATCTTCGAATTCTCACTAGGAGAAGCCCCGGGCTGTTAACAAAGTTGATAGCTGGTCTTCAAACTCTCTACCTCACTGTCCTACATCTTAATGTCACCACCATAGAACCTTTGGTATTCTACTCCATCAGTGCTAAGGTTGAAGAGGGATTCCATCTTGGTTCAGTAGATGGTATTGCTACAGCAGTTCATCATTTGCTTGCAAGAATTGAAGAAGAAGCTTCCCTTTGCTGTTGAACAGGTTCTTCCGGGGGGGAAGAGAATTTAGTGAAATTACCAAATCAACCCTCTACTAAGAGGGAGGGAAAGAATATTTGTTGATGGCTTTAGATTTTGTCTTTTTTTCCTTTCTTTGGTTTCAAACCGATGTGTTAATGCTAAACCATAGTTGCAGTAGATGGTGCCTTTTAGGTTGTTTTAAGTACAACTTGTTTGGGAATAATTTCCACAAAATTTGACAGACCAGACTTGAAACCAAATGAAAAAAAAAAAAAATGTTGATATTGTTTATCAGGATTGCCGTTAGTTGAGCTGTGTATTGTCCACTTCATTGCCCCAATATGGAATTAGTTTTGCAATGAGG	1627	0.4044	MMALETLSSNELSNFIIYDTISASPFINRDSPEASFFESFVNYQEHEPAFDSTLRTRKRQASEPETIGRKQNVVGVQSRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQLLHQEVAQSNENSAISKLMQPPFAQFFLYPQYTWSQTPNKYTSKTKATIADIEVTLIETHANLRILTRRSPGLLTKLIAGLQTLYLTVLHLNVTTIEPLVFYSISAKVEEGFHLGSVDGIATAVHHLLARIEEEASLCC	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste7g00015	300	PANTHER	MAX DIMERIZATION, MAD	42	296	-	-
	Pste7g00015	300	SMART	finulus	103	154	IPR011598	GO:0046983
	Pste7g00015	300	MobiDBLite	consensus disorder prediction	72	95	-	-
	Pste7g00015	300	Pfam	Helix-loop-helix DNA-binding domain	98	149	IPR011598	GO:0046983
	Pste7g00015	300	Coils	Coil	145	165	-	-
	Pste7g00015	300	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	97	148	IPR011598	GO:0046983
	Pste7g00015	300	CDD	bHLH_AtFAMA_like	100	159	-	-
	Pste7g00015	300	Gene3D	-	89	166	IPR036638	GO:0046983
	Pste7g00015	300	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	96	166	IPR036638	GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste7g00015	Pste-Chr7	101462	104472	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste7g00015	89	269	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G22490	54.696	2.39e-59	191

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Pste7g00015		HLH	5.2e-10	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste7g00015	7	101462	104472	Pste7g00015	7	101462	104472	ECH