Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste7g00002 TTCCAAACCCTAAGCGGCTAGGGGGCTATCTCTTGTAAGTTGTTGGTTTTAGTTAGAGCTTCAACGCCGTCCTCTTCCATCACACCAGAGTGTCATCCCCACATATTGCCCTGACTCATCATGTTTTATTTTTGTGAAGAGTCACTCACACGCCAGGGCATCTCCGCGTTTGCCATTTGATCTTCTCCCATTCTCCCGTCCGGTGACTTTCATTTTTGTTTGTTCTTCTGTTCCATCGTCTCGCGTTCGCGTTTCTTTTGATCTCCACCGACGCAACTCCAGCGACGACGCCACCCAACACCTCTGCATCTCTCTGGCGGTTCTGGCATGGATGCGCCACCCCGTTGACGTCACTCGCTGTGAAGAACTCTCCATCTGTAGGGTTCCTTTCCTGGACCGCAGGTTAAAGTCAGTACTGCGGGAGAAGATGGGAATCTGGAAGCTCTTCCCGGTTCAAGTCGGTATTTGGCTAGAAACTGTTGGACCAGGTGATTTTGAACGAGATCTTTGTGTAAACTCGCCCACCGGAAGTGGCAAAACGTTGGCCTATGCTCTTCCTATCGTGCAAAACTTGGCGTCCACTCACACTGTTCACTGCCTTCGTGCTTTGATTGTACTTCCCACACGCGACCTAGCTTTACAGGTTAAGCACGTCTTCCACCTCCTTGCATCATCGGTGGGTCTGCACGTTGGCTTGGCTGTTGGTGGTCAATATTCGGTTGATGATGAGATTTCTAGCTTCCTTTATCGACCAGGGGGAGACAACGGTCTAGACCCACCTTTGTTTGGCTTTCAAACCAAGGTGGACATATTGGTAGCCACCCCTGGAAGGCTCGTTGACCATGTCAACAATGGCTTAACTTTGAAACATCTTCATTATCTTGTGGTTGATGAAGCAGATCGATTGCTCCGGGAGGACTACCAGTCTTGGTTACGTACTGTGCTTAAATTGACCCAGTCTGATGATAAGGATGATGGTGGTAATGCTTTTCAATTGGGTAGTGGAGTTGAGAGGGGGTCCAAGCCTCACTCTAGGCTGGCAAAGATAGTTTTATCTGCAACATTAACTCGGGACCCAGGAAGGCTTGCTCAGCTTAATTTGCATCATCCTTTATTTTTGAGCGCTGGGAAAATGCGTTATCGGCTCCCAGAAAATTTGGAATCTTACAAACTGATCTGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGATTCAACACATCGTCTCTGCAAATTGCTGAATTGTTTTGGAGATCTGCAAATTGATATCAAGGAGTATTCCCGTCTAAAAAATCAACGGGTAAGAAGCAAGACACTGGATAAATTTCGGAAGGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTAATTAATTATGACATGCCCAAATATACAAAGACTTATGTTCATCGAGCTGGTAGGACGGCAAGAGCTGGCCAGACTGGACGTTGCTTCACATTAATGTCAAATGATGAGGTTGGAAGATTTAATAAGTTGATGAAAAAGGCTAAGGGAAGTGCTTGTCTCGTGCATAGTGTTCCGTCCAGTTTGATTGAAGCACTTCATAGTACCTACCAATCAGGTGAATATTGTGTAGATCTTCTAAAATTGTTTGATGCCTGCATAAGGAATGAATATAAAATAATACAGTTGTCCTTTGAGAATGTATCTGGGACAACGAGCTTAATGCTTGATTTTCTTTTCCTTTTTGCTGTTTTACATGGAGTGTTTCATAGACTCTGTCATGATTTTGCATTAAGTCTCTGGCATGTTTCATTGTTGGCAGCACTGTCAAAATTGAAGGAGATAATTTTGGAGACCCGGAGTAAACCCAAGGATAAGTGTTCTCAATATTCAGGAGAATAG 1957 0.4456 MRHPVDVTRCEELSICRVPFLDRRLKSVLREKMGIWKLFPVQVGIWLETVGPGDFERDLCVNSPTGSGKTLAYALPIVQNLASTHTVHCLRALIVLPTRDLALQVKHVFHLLASSVGLHVGLAVGGQYSVDDEISSFLYRPGGDNGLDPPLFGFQTKVDILVATPGRLVDHVNNGLTLKHLHYLVVDEADRLLREDYQSWLRTVLKLTQSDDKDDGGNAFQLGSGVERGSKPHSRLAKIVLSATLTRDPGRLAQLNLHHPLFLSAGKMRYRLPENLESYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVDSTHRLCKLLNCFGDLQIDIKEYSRLKNQRVRSKTLDKFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYTKTYVHRAGRTARAGQTGRCFTLMSNDEVGRFNKLMKKAKGSACLVHSVPSSLIEALHSTYQSGEYCVDLLKLFDACIRNEYKIIQLSFENVSGTTSLMLDFLFLFAVLHGVFHRLCHDFALSLWHVSLLAALSKLKEIILETRSKPKDKCSQYSGE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste7g00002 541 CDD DEADc_DDX51 25 264 - -
Pste7g00002 541 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 291 441 IPR001650 -
Pste7g00002 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 418 IPR027417 -
Pste7g00002 541 Gene3D - 275 439 IPR027417 -
Pste7g00002 541 Pfam Helicase conserved C-terminal domain 288 399 IPR001650 -
Pste7g00002 541 CDD SF2_C_DEAD 276 407 - -
Pste7g00002 541 SMART ultradead3 34 279 IPR014001 -
Pste7g00002 541 PANTHER RNA HELICASE 23 422 - -
Pste7g00002 541 Gene3D - 2 266 IPR027417 -
Pste7g00002 541 Pfam DEAD/DEAH box helicase 56 249 IPR011545 GO:0003676|GO:0005524
Pste7g00002 541 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 185 193 IPR000629 -
Pste7g00002 541 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 263 IPR014001 -
Pste7g00002 541 SMART helicmild6 315 399 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste7g00002 Pste-Chr7 6789 14592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste7g00002 58 412 Eukaryotic Initiation Factors Gene Family AT1G72730 23.876 6.77e-24 102