Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04582 atgtacgagggattagagcagcagatgccttccttcaacctgccttctaaaatattatgtaaagtggccaatgttcatcttcgggctgaacctgaaacagatgaagtatatgcccagctaactttgcttcctgaagcagatcaaagtgaggtgaccagccctgatgatcctctgcctgaatctccgagggtcaagattcattcattttgcaagacacttactgcttctgacaccagtacccatgggggtttctctgttcttcgaagacatgcagatgattgtctgcctccactggatatgtctcagcagccaccatggcaagaattggttgcaactgatttacatgggaatgagtggcattttagacatatttttcgagatttagtggttctgtctgctgcagttcaatttagtggtggagtaaagagttctattagtttccagggcaacccaagcgccacttacttaccactgggtggagtgtctttgggtaaaaatggagagctgcgagttggggttaggagggtcatgagacagcaaagtaatgtgcctccttctgttatatctagtcacagtatgcatcttggagttctggccactgcttctcatgccattgccactggaacactgttttctgtgttttacaagcctagaacaagccggtcagagtttattgtgagtgtcaacaagtatctggaagctcagagccataagctctctgttgggatgagattcaaaatgagatttgagggtgatgaaattcctgaaagaaggttcagtggcacaattgttggtgttggagataataaatcattagtctggcctgattctgagtggcgatcattaaaggttcaatgggatgaagcctcatcaattttgcgtcctgacagagtttcgtcatgggaattggagccacttgtctctaccactcctgccaacttgcagccgacccaaagaaacaagagggcacgacctctcattttgccatctacaatgcctgattcttctatgcaaggggtatggaaatcaccggttgaatctacatctttctcttattgtgacccccaacatggacgtggcctctatccatcagccaagttcaattcttctgcagctaactttcttggttttagtgggaatagctctgtgggatctccttccaacaaatcaatatattggtctaataggatggaaaattccttggaatctatttcagctatagctgtcaaagaagctggagagaagagacaaggcactggaaatggctgtagactctttgggattcagttacttgagaattctaatgcagaaggaagtcttcaaacagtcactgatgataggttttttccatctatagatgctgagtctgatcagcattctgaaccatcaaatgccaatcgatctgattacgatgctgaaaaatcatgtctgcagtctcccttggagtcacaaagcaagcaaataaggagctgtacgaaggttcacatgcaaggaatggctgttgggagggccgtggatttaacacgatttgatggatatgaggatttgctcagaaaattggaagagatgtttgacataaaggctgagctttgtgggtttctgaaaaaatggcaggttgtctacactgataatgaagatgatatgatgatggttggagacgatccatgggatgagttctgcagtgttgtgaggaaaattttcatctacacggcagaggaggtgaagaagctttcgccgaaaataggacttacaatgaatgaaaaatttaaaccaagcaagctggactcggaagcaattgtgaatcctgaggatcagtcgtctaatgtggagcccagttgctag 1842 0.0 MYEGLEQQMPSFNLPSKILCKVANVHLRAEPETDEVYAQLTLLPEADQSEVTSPDDPLPESPRVKIHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRDLVVLSAAVQFSGGVKSSISFQGNPSATYLPLGGVSLGKNGELRVGVRRVMRQQSNVPPSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSLVWPDSEWRSLKVQWDEASSILRPDRVSSWELEPLVSTTPANLQPTQRNKRARPLILPSTMPDSSMQGVWKSPVESTSFSYCDPQHGRGLYPSAKFNSSAANFLGFSGNSSVGSPSNKSIYWSNRMENSLESISAIAVKEAGEKRQGTGNGCRLFGIQLLENSNAEGSLQTVTDDRFFPSIDAESDQHSEPSNANRSDYDAEKSCLQSPLESQSKQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKAELCGFLKKWQVVYTDNEDDMMMVGDDPWDEFCSVVRKIFIYTAEEVKKLSPKIGLTMNEKFKPSKLDSEAIVNPEDQSSNVEPSC 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04582 613 MobiDBLite consensus disorder prediction 453 468 - -
Pste6g04582 613 Gene3D - 238 311 - -
Pste6g04582 613 CDD B3_DNA 67 127 IPR003340 GO:0003677
Pste6g04582 613 Gene3D - 66 177 IPR015300 -
Pste6g04582 613 ProSiteProfiles PB1 domain profile. 489 582 IPR000270 GO:0005515
Pste6g04582 613 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 578 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste6g04582 613 Pfam Auxin response factor 201 283 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste6g04582 613 SUPERFAMILY DNA-binding pseudobarrel domain 65 204 IPR015300 -
Pste6g04582 613 MobiDBLite consensus disorder prediction 599 613 - -
Pste6g04582 613 FunFam Auxin response factor 484 578 - -
Pste6g04582 613 SUPERFAMILY CAD & PB1 domains 491 566 - -
Pste6g04582 613 MobiDBLite consensus disorder prediction 594 613 - -
Pste6g04582 613 Pfam AUX/IAA family 486 579 IPR033389 -
Pste6g04582 613 MobiDBLite consensus disorder prediction 453 476 - -
Pste6g04582 613 Gene3D - 484 578 - -
Pste6g04582 613 FunFam Auxin response factor 238 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04582 Pste-Chr6 35171896 35177405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04582 1 609 B3 DNA Binding Superfamily AT1G59750 62.701 0.0 728