Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04563 atggaagtatcgagtgaagaaggagaaatccgtatcccaagtacatacggtgggggggggcatggagtgatgattcagcatgagcataaccacattatatccccatcaaacggcacaggtatgatgcagcagcagcaggatgatcagggacacgggtacaagaaagtggtgaggtacagagaatgcctgaagaaccatgcagcagcgatgggagggaatgccacagatgggtgtggggagttcatgccaagtggagaagaagggagcatagaggcactcaactgctcagcctgccattgccacagaaacttccacagaaaggaagtggagggtgagcaaaactcgtgtgattatcacacattgaacagaagaagactcattctaggacctcacaagaacctgctccctcacgaccctcttgcctacaccacacccacgggtaatatccttccttcaagaacagtgcaccctcaccagatcataatgccctacaacattggccacctcccttcagaatccgacgaacaggaggatgctggagctggaattggaatgatgcacgtgcaccctcctccctcccattctcaccttgtcaagaaacgcttcaggaccaagttcacccaggaccagaaggacaaaatgctcaacttcgctgagaaggtgggttggaaaatccagaagcaagaggagtccgtcgttcagcacttctgccaagagattggggtcaagagaagagtgctcaaggtttggatgcataacaataagcacaatctctccaaaaagaaccctccaacctcagcaccttaa 807 0.0 MEVSSEEGEIRIPSTYGGGGHGVMIQHEHNHIISPSNGTGMMQQQQDDQGHGYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGSIEALNCSACHCHRNFHRKEVEGEQNSCDYHTLNRRRLILGPHKNLLPHDPLAYTTPTGNILPSRTVHPHQIIMPYNIGHLPSESDEQEDAGAGIGMMHVHPPPSHSHLVKKRFRTKFTQDQKDKMLNFAEKVGWKIQKQEESVVQHFCQEIGVKRRVLKVWMHNNKHNLSKKNPPTSAP 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04563 268 SUPERFAMILY Homeodomain-like 190 260 IPR009057 -
Pste6g04563 268 FunFam Zinc-finger homeodomain protein 2 187 260 - -
Pste6g04563 268 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Pste6g04563 268 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 258 - -
Pste6g04563 268 Pfam ZF-HD protein dimerisation region 57 109 IPR006456 -
Pste6g04563 268 NCBIfam homeobox domain, ZF-HD class 199 255 IPR006455 -
Pste6g04563 268 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Pste6g04563 268 Gene3D - 191 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04563 Pste-Chr6 34976349 34977954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04563 54 262 ZF-HD Transcription Factor Family AT1G14440 57.674 2.57e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pste6g04563 ZF-HD_dimer 2.3e-28 No_clan