Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04558 atgtcagaaatgcgggtatctgagcttcacttgaagaaggaactcacccaaatccgcaaggctgctcgagtactcagagatcctggcaccacatcttcttggaagtcaccgctgagttcatcaagatctgtggctgcatggaacaaagagtgcgggagtagaaggttcagtgcaaacaacagcaatgagaaagagaaagagaaagagaaggagaaggagaaggagaaggagaaaagggtgttcttgtacaattggaagaactacaaatcatccagcgagaaatacaatgaggaggaagaagatgatgatggcggtggttcttcgtcgcttctcggggacagagacagtttgagtgatgctcgcaatggttgtgactccaagagtgatacttacttggccgctgctgccacattccgatgtggggatgccaatcttgtttccgttaagaaaaagagtaagaaaagtagtagccctcattttgattttttagcaaagtatcaacaccatacaggaagaaattttgtgagctcttccaaggcaatgcctttttttagcagggatgactcagttgaacactctgatgacacggaggattacagtaattctgagggcgtgagagccatttcggggagttcccctttgcttctcaaactgaggcaaaagaattggtctcgttcttcctccaagtttttgagaagaagcagaaaagaggagtcttcatattcttatagcacccctgcattgtctactagttcgtacaatagatatggtaatggtcagcgttatcccagcactcttggctcctgggacggcacgacgacatccgtgaatgacgatgaaattgatgatcatttggatttgcctgggcgccaaggatgtggaattccttgttattggtccaagaggactcctaagcatagagggatgtgtgggagttgttattctccctctctctccgacactttaaggagaaaaggcagtagcatgctctgtggaactcagactatttaccccacacaccgcagatctgtttctgcctctcacaagaggagactttctctgaggagtgctcgaggtgttattccatttctccctaacagtggtgtcgttagagaagggtcgtctgtgggaaccgatgatgaactttccacaaactttggggagcttgatcttgagggtttgagccgcttggatggaagaaggtggtcatcaagttgtaggagtcaagaaggattggaaattgtagctctgaatggtgaagacgacggcacaccggatactattcgtagtttcagccagaagtataggcctatgtttttcggcgaactgattgggcagaatattgttgttcagtcgcttatgaatgctgtttcaaggggacgaattgctcccgtctatctgtttcaaggtccccgtgggactggtaaaacatcaactgctaggatatttgccactgccttaaattgttcctgtcctgatgagagtaaaccttgtggctactgcagggaatgttctgatttcatttctggtaagagcagtaatctgttggaagttgatggaaccaataagagaggaattgacaaggctagatatctactaaaaagattgtctgctggctcatcatctgcctccctacaatatacagtttttgttatcgatgaatgtcatttgttgccctccaaaacatggttgggatttcttaagtttcttgaagaaccacctcagcgagttgtgtttatatttataacatctgatcttgacaatgtgccacgaacaattcaatctcgatgccagaagtacctttttaataaaattaaagatggggatattgtgaccaggttgaggaaaatatctactcaggagaacctcgatgttgaagcagatgcactggatctcattgctatgaatgctgacggttcacttcgtgatgccgaaacaatgttagaacaacttagtttgctggggaagagaattactacttctcttgtcaatgaacttgttggagttgtttcagatgaaaaattattggaacttttggagttagcaatgtcatcagatactgtagagacagtgaaaagagccagggaattgatggactctggagttgatccaatggttttgatgtctcaactagctggtcttatcatggacatcattgctggatcatatgcagtcattgactccaaacctgatgattcattctttggtggacggagtttgaatgaatcagagttggagaggttgaagaatgctttgaagcttctctcagaggctgagaaacaactaagaacatccagtgaacgctctacatggttcacagcgactctattgcagcttggttctacaccttctcctgatcttactcaatcaagcagcagtagaaggcagagctgcaagacaactgaagatgatccatcaagtgtctcaagagatgttacttctggcacacacaaatcagaccctcagtatgtgcctcggaggtcagcatacactgcatcccagcaaaacgcattaaatgataattccaaccatcaaaaggatatatcctcaaagattgaaggtttcagcttgaaatcaaagccatcaaacagcccagtcgtagatgatggctccacagttgtctcatctgatgatcttatggttgggaatacaatgtataggtgcatagattcagggaagttatgtgacatttgggtgcattgtattgagaggtgtcactctaagacattgaggcagctgctacacaatcatggaaagcttgtatccgtatgtgaagcagaaggtgttttggtagcatatgttgcttttggagatgcagatattaaagatagggctgagaggtttttaagaagcattacaaactccatggaaatagttcttaggcgcaatgtggaggtcagaataatccacttgccagatggtgaaggtgaaaatcaggttaatcttctgggtctaaagcagacagagtcaatagtagctagtgacagagaacaaagacaaggtcacatgaatggaacggagtcttattctagtttgcctcctttactggatggaaaccttcagtctgccgctgcttcatcagatattctggctgaaggaaatggtatgagggagaggagacaggataatccaatgcatagaattgaatccatcattcgtgagcagaggctggaaactgcctggttgcaggcagtagaaaagggatcccctggatcattgaatcgtttgagacctgagaaaaatcaagtgctgccacagaacggtttggacccagtggagtccatggattcaacaagattttcttctcaccagcattgggaagatgacccaaataatgaagtcaaaattttgacccttaaaaatggaagggtcccacagaaggatcagattggtagaaaggcagatcgttatcccatgtccccaagtttattacatgacaacagtttagcaacaatttctggaaaagacaatctgggatatgaatcggggtcaggaggtggtgggtgtggatttttatgttggaataagtcaaagcctagaagggtaaaaggtggcaccccagttagagcgcgtagagctgcgacatttacgttgtttggtgactgcggtaagccaaagcggagaagataa 3630 0.0 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNKECGSRRFSANNSNEKEKEKEKEKEKEKEKRVFLYNWKNYKSSSEKYNEEEEDDDGGGSSSLLGDRDSLSDARNGCDSKSDTYLAAAATFRCGDANLVSVKKKSKKSSSPHFDFLAKYQHHTGRNFVSSSKAMPFFSRDDSVEHSDDTEDYSNSEGVRAISGSSPLLLKLRQKNWSRSSSKFLRRSRKEESSYSYSTPALSTSSYNRYGNGQRYPSTLGSWDGTTTSVNDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLSDTLRRKGSSMLCGTQTIYPTHRRSVSASHKRRLSLRSARGVIPFLPNSGVVREGSSVGTDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEDDGTPDTIRSFSQKYRPMFFGELIGQNIVVQSLMNAVSRGRIAPVYLFQGPRGTGKTSTARIFATALNCSCPDESKPCGYCRECSDFISGKSSNLLEVDGTNKRGIDKARYLLKRLSAGSSSASLQYTVFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDSKPDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDVTSGTHKSDPQYVPRRSAYTASQQNALNDNSNHQKDISSKIEGFSLKSKPSNSPVVDDGSTVVSSDDLMVGNTMYRCIDSGKLCDIWVHCIERCHSKTLRQLLHNHGKLVSVCEAEGVLVAYVAFGDADIKDRAERFLRSITNSMEIVLRRNVEVRIIHLPDGEGENQVNLLGLKQTESIVASDREQRQGHMNGTESYSSLPPLLDGNLQSAAASSDILAEGNGMRERRQDNPMHRIESIIREQRLETAWLQAVEKGSPGSLNRLRPEKNQVLPQNGLDPVESMDSTRFSSHQHWEDDPNNEVKILTLKNGRVPQKDQIGRKADRYPMSPSLLHDNSLATISGKDNLGYESGSGGGGCGFLCWNKSKPRRVKGGTPVRARRAATFTLFGDCGKPKRRR 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04558 1209 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 433 818 - -
Pste6g04558 1209 MobiDBLite consensus disorder prediction 55 77 - -
Pste6g04558 1209 Coils Coil 57 80 - -
Pste6g04558 1209 FunFam DNA polymerase III subunit gamma/tau 426 604 - -
Pste6g04558 1209 CDD HLD_clamp_pol_III_gamma_tau 605 668 IPR045085 -
Pste6g04558 1209 MobiDBLite consensus disorder prediction 59 77 - -
Pste6g04558 1209 Pfam DNA polymerase III, delta subunit 445 605 - -
Pste6g04558 1209 MobiDBLite consensus disorder prediction 807 845 - -
Pste6g04558 1209 MobiDBLite consensus disorder prediction 91 123 - -
Pste6g04558 1209 Gene3D - 607 668 - -
Pste6g04558 1209 CDD AAA 444 602 - -
Pste6g04558 1209 SMART AAA_5 462 612 IPR003593 GO:0016887
Pste6g04558 1209 MobiDBLite consensus disorder prediction 29 43 - -
Pste6g04558 1209 MobiDBLite consensus disorder prediction 23 43 - -
Pste6g04558 1209 Pfam DNA polymerase III subunits gamma and tau domain III 659 778 IPR022754 GO:0003887
Pste6g04558 1209 MobiDBLite consensus disorder prediction 782 845 - -
Pste6g04558 1209 NCBIfam DNA polymerase III subunit gamma/tau 430 779 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pste6g04558 1209 MobiDBLite consensus disorder prediction 782 796 - -
Pste6g04558 1209 FunFam DNA polymerase III subunit gamma/tau 606 668 - -
Pste6g04558 1209 MobiDBLite consensus disorder prediction 996 1017 - -
Pste6g04558 1209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 652 IPR027417 -
Pste6g04558 1209 Gene3D - 424 603 IPR027417 -
Pste6g04558 1209 SUPERFAMILY post-AAA+ oligomerization domain-like 676 777 IPR008921 GO:0003677|GO:0006260
Pste6g04558 1209 Coils Coil 738 768 - -
Pste6g04558 1209 MobiDBLite consensus disorder prediction 1003 1017 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04558 Pste-Chr6 34902199 34909833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04558 433 720 Core DNA Replication Machinery Family AT1G21690 24.242 1.02e-14 75.1