Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04556 atgttccaccatctgccattgatgaatgataacactgattcaaacaaaggtcatttacttgtattcttcaggggtatatttgagtctcccattgatacctttatcattagaatatctaaaatgagtaccaagaaaaggctctttcagatgataaatgatctgccaacaatcttcgaactggtgacaggaagtgccaagcaatcaaaggatcaaccagctgctcacaacaatggtagcaaatgcaaatccagtggaaaggtgtctcgtcagtctgagtctcaggcaaaggggatgaagatgtctgcaccacccaaagaagaggatgagagtggagaagaagaagaagatgaggatgatgaacaaggagcgacatgtggggcttgtggtgataattatggcactgatgaattctggatctgttgtgatatgtgtgaacgatggtttcatggtaaatgtgttaaaattactcctgccaaggctgagcacatcaagcaatacaagtgccctagctgcagtaacaagagggttagagtttga 537 0.0 MFHHLPLMNDNTDSNKGHLLVFFRGIFESPIDTFIIRISKMSTKKRLFQMINDLPTIFELVTGSAKQSKDQPAAHNNGSKCKSSGKVSRQSESQAKGMKMSAPPKEEDESGEEEEDEDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRVRV 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04556 178 CDD PHD_AL_plant 125 174 IPR044104 -
Pste6g04556 178 MobiDBLite consensus disorder prediction 66 122 - -
Pste6g04556 178 ProSitePatterns Zinc finger PHD-type signature. 125 171 IPR019786 -
Pste6g04556 178 MobiDBLite consensus disorder prediction 107 122 - -
Pste6g04556 178 ProSiteProfiles Zinc finger PHD-type profile. 122 174 IPR019787 -
Pste6g04556 178 FunFam PHD finger alfin-like protein 117 173 - -
Pste6g04556 178 SUPERFAMILY FYVE/PHD zinc finger 113 175 IPR011011 -
Pste6g04556 178 SMART PHD_3 124 172 IPR001965 -
Pste6g04556 178 Pfam PHD-finger 125 174 IPR019787 -
Pste6g04556 178 MobiDBLite consensus disorder prediction 66 97 - -
Pste6g04556 178 PANTHER CPG BINDING PROTEIN 41 177 IPR045104 GO:0006355|GO:0042393
Pste6g04556 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 173 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04556 Pste-Chr6 34878573 34882255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04556 44 175 Alfin-like Transcription Factor Family AT1G14510 74.242 8.99e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pste6g04556 PHD 8.4e-11 CL0390