Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04551 atgagtctgagccagagccagagccaggaggatgccaccacggcctccaccaccaacgaccaccaccaccacaacaacaacaacaaacccgacgatcacgaccacgacatggtcatgcccggtttccgcttccacccaactgaagaagagctcgttgaattctaccttcgccgtaaggttgagggcaagcgtttcaacgttgagctcattactttcctcgatctctatcgctatgacccttgggaacttcccgcgttggcagctattggagagaaggaatggtacttctatgtgcccagagatagaaagtatcgcaacggtgatcgtcccaatcgtgtcacaacctctggctattggaaggcaacgggagctgataggatgatccgaaccgagaactttcgctctatcggcctcaagaaaaccctagttttctattctgggaaagctcctaaaggaatccgaaccagttggattatgaacgagtatcgcttgccgcaccatgaaactgaacgatatcaaagttttaaacctatagctcaagcggagatatcgctttgccgtgtgtacaaaagagccggagtggaggaccatccctccctcccgcggtgtctcccaacgaggccatcttcgtcgagagcttcttcacattccgacaataaaaagcacagtgaaatggttcagcacaacatgggatttgtgggacaatcaaaggcagctgaacacatagttgagaaaatgaatgaaacggaagcaagcagtgatgtgaacacggctcttggactttccaaatacaatgcttaccgtgctgcaatgggtgcactgagcaccacaatggcacttccaatggatgaggaagggctgatgatgatgcagcaatcaaagcaagcagcacatgcaggtgttagcacaatcttctctgcagggccttctggctccaataataacactggaactggagtagtgaacatggatgatttgaataggctaatgagttatcaacagcagtactacaatgttcaaagccatcccaatcagttctctactttgctcatgcaaccatcacctgtagtctctctcggttcgctaccaaatccacttccaaccaccttctctgaccggctttgggagtggaatccaatcgctgagccaccaaatcaggagtacagcaacatgtccttcaagatcctctgcaaagtcatcaccactaccgtcgataccactaccgacgacaacgatggtggtggaggtaccaacagtgatggtggcaacattggcgatgggaggagtggtactagcgatggtggagacaccgatagagtggttgtggtggcggtggcaatgtggggtgacgccaccaccaccaccccaccatcatcgtcaccactgtcaccattgcagatactgtga 1407 0.0 MSLSQSQSQEDATTASTTNDHHHHNNNNKPDDHDHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHETERYQSFKPIAQAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASSHSDNKKHSEMVQHNMGFVGQSKAAEHIVEKMNETEASSDVNTALGLSKYNAYRAAMGALSTTMALPMDEEGLMMMQQSKQAAHAGVSTIFSAGPSGSNNNTGTGVVNMDDLNRLMSYQQQYYNVQSHPNQFSTLLMQPSPVVSLGSLPNPLPTTFSDRLWEWNPIAEPPNQEYSNMSFKILCKVITTTVDTTTDDNDGGGGTNSDGGNIGDGRSGTSDGGDTDRVVVVAVAMWGDATTTTPPSSSPLSPLQIL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04551 468 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 36 269 - -
Pste6g04551 468 FunFam NAC domain-containing protein 35 47 194 - -
Pste6g04551 468 MobiDBLite consensus disorder prediction 405 426 - -
Pste6g04551 468 MobiDBLite consensus disorder prediction 1 15 - -
Pste6g04551 468 MobiDBLite consensus disorder prediction 16 38 - -
Pste6g04551 468 MobiDBLite consensus disorder prediction 405 437 - -
Pste6g04551 468 MobiDBLite consensus disorder prediction 1 38 - -
Pste6g04551 468 Pfam No apical meristem (NAM) protein 40 164 IPR003441 GO:0003677|GO:0006355
Pste6g04551 468 ProSiteProfiles NAC domain profile. 38 191 IPR003441 GO:0003677|GO:0006355
Pste6g04551 468 MobiDBLite consensus disorder prediction 197 222 - -
Pste6g04551 468 Gene3D NAC domain 47 194 IPR036093 GO:0003677|GO:0006355
Pste6g04551 468 SUPERFAMILY NAC domain 38 190 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04551 Pste-Chr6 34815303 34820401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04551 37 217 NAC Transcription Factor Family AT2G02450 85.083 4.15e-111 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste6g04551 NAM 5.5e-34 No_clan