Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04536 atgtccaagcttcatcgctattcagttatatcttctgcacatccaccgtacgaatatttaaataactgcagtattgtcttaattttgcatgcagtgacagctctagtgtctcttacgaaaacctggcagtggcagaataaaccttccaattgggagggtccagatccttgtgatgatggttgggatggaatcaagtgcagcaaatcacgtgttacttccatagacctctctcacaataagggcttaactggtccacttccaaattcaattggaaatttgaccaagctgtcaaacttatttctagatggttgtggtttcaatggtcgtattccagatgaaataggataccttaaggagctggtcttcttagctttaaattctaataactttagtggacgaattccggcttctattggtaatctatcaaaacttaattggttagatataactgataatcagcttgaaggacccattcccatatcaaatggcagtacacctggtcttgacatgcttctcaatacaaaacatttgctttttgaatacaatgaatttgatggcaacattccttctactcttgggcttgttcagagtctggaggtggtgagccttgacgggaatttgttaagtggacatgtgcctctcaacataagcaatcttaccaacctcaatgagctctacttgtccaacaataaactctcaggttccttgccaaaccttcagggaatgaacctactcatctacttggatatgagcaacaatagttttgtcgaatcagattttccaggatggatttcgactcttgacaatttgtcaacactaaagatggaaaacacaggacttcaagggcagattcctgattctttgtttaacctttctaagttaaagaacgtgatactaaaagacaatagaatcaacggaagcctagacatcggcgacacatacagcaagcaacttcaagtcattgatttgcagaacaatagaattgaaaacttcaagcaacatgacatggtaccctctagcatcaagataaaacttgtccataatccagtttgcgaggaatcaggagtggcaaggagttactgctccaacccagagccgagtgtaccacctacaacaacaaagaattgtgagtatgctgcctgcagttcagggcaggttttcagtgctcactgcaaatgctcatatccatacacaggaactttaaggttcagaacaccctctttcttcgactggggaaatgaaacttccctccaggaacgtctcatgcacatttttcaatattgtaatctacccgtggattcagtctctttgagccatcgagataactacccatatcttggattgaccttacaaatcttcccatcaaaccgtgattatttcaaccaaccagagattctcagaatatgttctgcactaagcaacctaactatggatgccttttatttttaccctgatgaatatcaacactatggagaatctactgaatcaagtaaatcatcagatgttggcattataattagggcagccgttggtggtggttctgccctgcttgtgttactactcattgcaggtggttatgctttatggctaaagaaaaacgcagcaaaagcaatccaacagagttgtccatttggaagcggggactccagagacagaagtagtagtatccctcagttaaaaggagcaaggaggttctcttttgaagaggttaagaaatacaccaacaatttttcacaagataatgatattggatccgggggctatggaaaggtttatcggggtattctacctaatggtcaactcatagccataaaacgagctcaaaaagaatctatgcaaggagggtttcagtttaaagctgaggttgagcttctatcaagggtccaccataagaatcttgttagccttttgggtttctgttttgagcgaggagaacaaattctggtgtatgagtatatttcaaatggaactttaaaggatgcaatagggaaatcagtaattattaggttggactggactagacgactaaaaatagcacttgatatagcaaggggcttggattatcttcatcaacatgccaatcctcctatcatccacagggacatcaaatcaggcaacattttgctggaccaacgtttgaatgctaaagttgccgattttggtctttccaagatggttgattttgaaaaggatcatgttactactgaagtaaaagggaccatgggatacttagacccagagtattatacaagtgagcagttgacggaaaaaagtgatgtctatagttatggagtgctaatgttagagttgataactgcaaaaagaccaatagaacgagggaactatattgtgaaggtggtgaggaaggaaattgataagacgaaagatttatatggccttgagaaaattgtggacccaaccatcggcgcacgatcaacattgaagggttttgagatgtttgtggatcttgcaataaagtgcgttgaggattcccgtgctgacaggcctacaatgaatgatgtggtaaaagaaattgaaaacttgttgttttcagctggtttgaactcaaatgaatcaacttcatctagctatgacgaggtaagtgtgcaattctcaccatccctacaacaatga 2634 0.0 MSKLHRYSVISSAHPPYEYLNNCSIVLILHAVTALVSLTKTWQWQNKPSNWEGPDPCDDGWDGIKCSKSRVTSIDLSHNKGLTGPLPNSIGNLTKLSNLFLDGCGFNGRIPDEIGYLKELVFLALNSNNFSGRIPASIGNLSKLNWLDITDNQLEGPIPISNGSTPGLDMLLNTKHLLFEYNEFDGNIPSTLGLVQSLEVVSLDGNLLSGHVPLNISNLTNLNELYLSNNKLSGSLPNLQGMNLLIYLDMSNNSFVESDFPGWISTLDNLSTLKMENTGLQGQIPDSLFNLSKLKNVILKDNRINGSLDIGDTYSKQLQVIDLQNNRIENFKQHDMVPSSIKIKLVHNPVCEESGVARSYCSNPEPSVPPTTTKNCEYAACSSGQVFSAHCKCSYPYTGTLRFRTPSFFDWGNETSLQERLMHIFQYCNLPVDSVSLSHRDNYPYLGLTLQIFPSNRDYFNQPEILRICSALSNLTMDAFYFYPDEYQHYGESTESSKSSDVGIIIRAAVGGGSALLVLLLIAGGYALWLKKNAAKAIQQSCPFGSGDSRDRSSSIPQLKGARRFSFEEVKKYTNNFSQDNDIGSGGYGKVYRGILPNGQLIAIKRAQKESMQGGFQFKAEVELLSRVHHKNLVSLLGFCFERGEQILVYEYISNGTLKDAIGKSVIIRLDWTRRLKIALDIARGLDYLHQHANPPIIHRDIKSGNILLDQRLNAKVADFGLSKMVDFEKDHVTTEVKGTMGYLDPEYYTSEQLTEKSDVYSYGVLMLELITAKRPIERGNYIVKVVRKEIDKTKDLYGLEKIVDPTIGARSTLKGFEMFVDLAIKCVEDSRADRPTMNDVVKEIENLLFSAGLNSNESTSSSYDEVSVQFSPSLQQ 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04536 877 ProSiteProfiles Leucine-rich repeat profile. 221 243 IPR001611 GO:0005515
Pste6g04536 877 Gene3D Phosphorylase Kinase; domain 1 548 652 - -
Pste6g04536 877 Pfam Protein kinase domain 578 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g04536 877 SUPERFAMILY Protein kinase-like (PK-like) 551 844 IPR011009 -
Pste6g04536 877 FunFam Leucine-rich repeat receptor-like kinase 30 131 - -
Pste6g04536 877 SMART serkin_6 577 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g04536 877 FunFam Leucine-rich repeat protein kinase family protein 545 652 - -
Pste6g04536 877 Gene3D Ribonuclease Inhibitor 137 239 IPR032675 -
Pste6g04536 877 SUPERFAMILY L domain-like 41 328 - -
Pste6g04536 877 ProSitePatterns Protein kinases ATP-binding region signature. 583 605 IPR017441 GO:0005524
Pste6g04536 877 Gene3D Ribonuclease Inhibitor 31 136 IPR032675 -
Pste6g04536 877 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 653 862 - -
Pste6g04536 877 FunFam Leucine-rich repeat receptor protein kinase EMS1 134 239 - -
Pste6g04536 877 Gene3D Transferase(Phosphotransferase) domain 1 653 868 - -
Pste6g04536 877 Gene3D Ribonuclease Inhibitor 240 383 IPR032675 -
Pste6g04536 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672|GO:0006468
Pste6g04536 877 ProSiteProfiles Protein kinase domain profile. 577 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g04536 877 PANTHER RECEPTOR-LIKE PROTEIN 55 40 847 - -
Pste6g04536 877 CDD STKc_IRAK 583 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04536 Pste-Chr6 34671108 34679035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04536 43 846 Receptor kinase-like Gene Family AT1G79620 48.152 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Pste6g04536 Pkinase 5.6e-49 CL0016