Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04486 atggaccctggaggctttcatggctaccgcaagctccccaatgcctcctctgggttgaagctgtcggtgtcagacatgaacatgaacatgaacatgaacatgaggcagggagcatcagagaacaaccacagccagcacacaggcgaggagaacgaatgcacagtgagggagcaagacaggttcatgccaatagcgaatgtgataaggatcatgcgcaagattctgccgccgcatgcaaaaatctctgatgatgcaaaggagacgatccaagagtgcgtgtcggagtacatcagcttcatcacgggggaggccaacgagcgttgccagagggagcagcgaaagaccataactgcagaggacgttctttgggcaatgagcaaactaggattcgatgactacatagaaccactgaccatgtaccttcaccgctaccgtgagcttgagggtgaccgcacctccatgaggggtgaaccactggggaagaggactgttgagtacgccactcttggcgttggcgttgctactgcttttgttcagcctccctttcaccccaatggctactttggtgctgccatggggacttacgttagggaaccaccaccaaatgttgcctcctctcatcaccatgctgatcccaatgctcgctccttataa 654 0.0 MDPGGFHGYRKLPNASSGLKLSVSDMNMNMNMNMRQGASENNHSQHTGEENECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTVEYATLGVGVATAFVQPPFHPNGYFGAAMGTYVREPPPNVASSHHHADPNARSL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04486 217 ProSitePatterns NF-YB/HAP3 subunit signature. 92 108 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pste6g04486 217 SUPERFAMILY Histone-fold 58 157 IPR009072 GO:0046982
Pste6g04486 217 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 35 180 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pste6g04486 217 FunFam Nuclear transcription factor Y subunit B-6 50 166 - -
Pste6g04486 217 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Pste6g04486 217 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Pste6g04486 217 PRINTS CCAAT-binding transcription factor subunit A signature 127 145 - -
Pste6g04486 217 Gene3D Histone, subunit A 47 166 IPR009072 GO:0046982
Pste6g04486 217 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 61 125 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04486 Pste-Chr6 34187586 34189775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04486 1 151 CCAAT-HAP3 Transcription Factor Family AT5G47670 72.611 5.14e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pste6g04486 CBFD_NFYB_HMF 6e-26 CL0012