Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04478 atgatgaagcgctcaaacgacgacgtagcctccgggaagccagtgttcctaaccaaagcccagcgcgagcagttggccctccaacggcgccaggaagaggtcgctgagcagaagcggcgtcaggagcagctgctctcccgcaaccacctgtcggatcccaaaccctcctcggagcgggagcgggagcgggagcgtgagagggagagggagagggagagggagagggagagggagagggaccgagagcgtgagcgtgagcgtgaccgtgaccgcgatcgcgagcagcgagagcgcgagagggcacgcgatcgggaccaccgcgaagcagagcggcgcaacagagagagggagagggaagaggagagcagggcgcgagaacgggctagggtggagaaactggcggagcgggagcgggagaaggagctagagtcgataaaagagcagtacctgggatcgaagaagccgaagaagcgagtgataaagccgagtgagaagttccggttctcattcgactgggagaacacggaggatacctcgcgggacatgaactcactgtaccagaatccccacgaggctcagctcctgttcggacgcgggttccgtgctggcatggaccggcgcgagcagaagaagcttgctgccaagaacgagaaggagatgcgtgagcaaatccggcgcaaggacggccttgaagagaagcccgaggaggctgacgcccagcgtcgcaaggaggccgctgccgacctctacgacactttcgacatgcgcgttgaccgccactggagcgagaagaagcttgaggagatgactgagagagattggcgtatcttcagggaagactacaacatctcttacaagggttccaagattcctcgccccatgcgaagctggattgagagcaagcttagcaatgagcttttgaaggctgttgagaaggctggttataaaaccccttctcccattcagatggctgccattccccttggcttgcagcagcgtgatgtcattggcattgccgagactggttctggcaaaactgccgcctttgttcttcccatgttgagttacatcacccgccttcctcccatgagtgaggacaatgaggccgagggtccctatgccgttgtcatggcccccactcgcgagctcgcccagcagattgaggatgagactgttaagtttgctcagtatttgggcatcaaggtcgtctccattgttggtggccagtctattgaggagcaaggtttcaagattaggcagggctgtgagattgtcattgccactcctggtcgtttgattgattgtttggagcgtcgttatgccgttctcaaccagtgcaattatgttgttcttgatgaggccgatcgtatgattgacatgggctttgagccccaggttatgggtgtccttgatgccatgccttccagcaatctcaagcctgagaacgaggacgaggagcttgatgagaagaagatttaccgcaccacctatatgttcagcgccaccatgcctcccgctgttgagaggctcgccaggaaatatttgaggaatcctgttgtggtcaccattggcactgctggaaaggcaaccgatttgatcagccagcatgtcatcatgatgaaggaatccgaaaaattttacaagcttcagaggttgcttgatgagcttaatgacaagactgccattgtctttgttaacaccaagaagaatgcagatatggttgccaagaatttggataaggaaggatatcgtgtcactactttgcatggaggtaagtcacaggagcagagggagatcagtcttgaaggatttagaaccaagagatataatgttcttgttgctactgatgttgctggacgtgggattgacatacctgatgtggctcatgtcattaactatgatatgcctgggaatattgaaatgtacacgcaccgtattgggcgtactggtcgtgcaggaaagacgggtgtggctacaacgttcttgactcttcaggacaccgatgtcttttatgacctcaagcagatgctcattcaaagcaacagtcctgtaccacctgaactggcaaggcatgaagcttcaaaatttaagcccggaactattccagacagaccacctaggcgaaatgacactgtttttgcacattag 2148 0.0 MMKRSNDDVASGKPVFLTKAQREQLALQRRQEEVAEQKRRQEQLLSRNHLSDPKPSSERERERERERERERERERERERDRERERERDRDRDREQRERERARDRDHREAERRNREREREEESRARERARVEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRRKDGLEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWIESKLSNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04478 715 Gene3D - 256 525 IPR027417 -
Pste6g04478 715 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 548 692 IPR001650 -
Pste6g04478 715 MobiDBLite consensus disorder prediction 683 715 - -
Pste6g04478 715 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 450 458 IPR000629 -
Pste6g04478 715 FunFam probable ATP-dependent RNA helicase DDX23 526 714 - -
Pste6g04478 715 SMART ultradead3 314 536 IPR014001 -
Pste6g04478 715 CDD DEADc_DDX23 306 522 - -
Pste6g04478 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 674 IPR027417 -
Pste6g04478 715 MobiDBLite consensus disorder prediction 22 158 - -
Pste6g04478 715 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 295 323 IPR014014 GO:0003724
Pste6g04478 715 Coils Coil 207 233 - -
Pste6g04478 715 CDD SF2_C_DEAD 533 662 - -
Pste6g04478 715 MobiDBLite consensus disorder prediction 206 244 - -
Pste6g04478 715 Coils Coil 59 87 - -
Pste6g04478 715 Coils Coil 107 143 - -
Pste6g04478 715 Coils Coil 17 47 - -
Pste6g04478 715 Pfam DEAD/DEAH box helicase 320 510 IPR011545 GO:0003676|GO:0005524
Pste6g04478 715 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 228 692 - -
Pste6g04478 715 SMART helicmild6 572 653 IPR001650 -
Pste6g04478 715 Pfam Helicase conserved C-terminal domain 547 653 IPR001650 -
Pste6g04478 715 MobiDBLite consensus disorder prediction 25 154 - -
Pste6g04478 715 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 326 521 IPR014001 -
Pste6g04478 715 FunFam probable ATP-dependent RNA helicase DDX23 256 525 - -
Pste6g04478 715 Gene3D - 526 713 IPR027417 -
Pste6g04478 715 MobiDBLite consensus disorder prediction 690 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04478 Pste-Chr6 34076358 34079155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04478 293 675 Eukaryotic Initiation Factors Gene Family AT3G19760 31.771 9.79e-61 207