Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04454 atgcaagcgtctcagaagcacccaagttcagctggtgtccatttctatcaccagcctgtacaaggcgtttaccaaatgttgcaaagcaatgtatgtcatgatgctcatgatagcagcagtcagggaactagtgtttcttttgagacctgcaaggagcaatactttactctggaatcatgtccagcacccaccactgctttcatggattgtgatgattctccttcctatgccagtgtttcatctaaaagaactccgttttctccacaagcttctcagtcatgctattcagatcaccaccagtcctcggacaacacctacggatcacctataagtgggttgtctagcgttgatgagggccatgacctgaagcacaagcttagagaactggagatttcattgatggggctgaatgaatctgacatggtagacagttgtggcagctggattaagggtggcctccacggagcatctgggttggctaaacataattgggatcagattgcagaaaatattcatcaatttgacttgaaaggtgtcctcagggcatgtgcgcaggccgtctctgatgatgatattcctagagcaagaggctggatggataatatattggggaaaagggtatcagtctctggagatccaagccagaggttgggtgcttacttgttggaggggcttagagcaaggttggaatcatcagggagtctcatttacaaatccttgaagtgtcaacaagaactaccaaccagcaaagaactaatgagttacatgcacatcctctaccagatttgcccatactggaagtttgcgtacgtatctgcaaatgctgtcattacagaagcaatggcaaatgaattcaggattcacataattgatttccaaattgcacagggcacacaatggcatttacttatccaggctcttgcacataggcctgggggacccccttccctccgtgtgactggtgttgatgattcacagtcctttcatgcacgtggtggaggacttcagattgtaggagaaaggctgacagattttgccaggtcttgtggagttccatttgaattccacagtgctgcaatgtctggctgtgaggttgtgcgaggaaatgttgaaattcgacctggagaagccttggctgtaaattttccttatgttttgcaccacatgccagatgaaagtgtgagcactgagaatcacagagacagattgttgaggttggttaagagcttgtcccccaaggttgttacccttgttgagcaagaatccaacaccaacacttctcctttctttcataggtttgtcgagaccctggattattatactgctatgtttgaatccatagatgtggcttgccccagagatgacaagaagcggattagtgctgaacagcactgcgtggcaagagacattgtcaacatgatagcttgtgagggggtggagagggtggagaggcatgaacttttggggaagtggaggtcaagactttctatggctggatttaaacagtgccaattaagttcttcagtgatggttgctgcccaaaatctcctaaaggacttcagtcaaaattataggcttgaacacagagatggttctctttatcttggctggatgaacagacatatggtcacctcttctgcttggaggtga 1650 0.0 MQASQKHPSSAGVHFYHQPVQGVYQMLQSNVCHDAHDSSSQGTSVSFETCKEQYFTLESCPAPTTAFMDCDDSPSYASVSSKRTPFSPQASQSCYSDHHQSSDNTYGSPISGLSSVDEGHDLKHKLRELEISLMGLNESDMVDSCGSWIKGGLHGASGLAKHNWDQIAENIHQFDLKGVLRACAQAVSDDDIPRARGWMDNILGKRVSVSGDPSQRLGAYLLEGLRARLESSGSLIYKSLKCQQELPTSKELMSYMHILYQICPYWKFAYVSANAVITEAMANEFRIHIIDFQIAQGTQWHLLIQALAHRPGGPPSLRVTGVDDSQSFHARGGGLQIVGERLTDFARSCGVPFEFHSAAMSGCEVVRGNVEIRPGEALAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVETLDYYTAMFESIDVACPRDDKKRISAEQHCVARDIVNMIACEGVERVERHELLGKWRSRLSMAGFKQCQLSSSVMVAAQNLLKDFSQNYRLEHRDGSLYLGWMNRHMVTSSAWR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04454 549 ProSiteProfiles GRAS family profile. 167 549 IPR005202 -
Pste6g04454 549 MobiDBLite consensus disorder prediction 78 112 - -
Pste6g04454 549 Pfam GRAS domain family 178 549 IPR005202 -
Pste6g04454 549 MobiDBLite consensus disorder prediction 78 114 - -
Pste6g04454 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 119 542 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04454 Pste-Chr6 33881803 33885543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04454 1 549 GRAS Transcription Factor Family AT4G17230 59.710 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pste6g04454 GRAS 4.1e-126 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04454 6 33881803 33885543 Pste2g02663 2 26866446 26868082 PCT