Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04453 atggtttcgacggagaaggatactagcaaagctgggaggaccatagggaagtcgatgcgaaccgtgcggtccattttattccaacgcgaggaggccacctgcgtttccgacaccctaagcctaacagattcgctaatacaactggcatcgcgaaacagcaagtcaattaaatcttcggttacggaggatcaacttctggagctctcagaagctctcagcgatttctcggcctgcagcagcgatatctcgggggagctccacaggctcgccagtgtctcctcgtcccaccccgaagctgaagctgaagccgagccagagccatgcgtagggtttctccaaagggattctttctcgaccgagatcatagacagtatctccccggaggatcttcagccgacggtcaagatctgcgtggagggactgcagtcggcgtctgaggcggtgaagcgatctgcggcggccaagctgaggctgttggcgaagaacagagcggataaccgcgcactgatcggcgagtgcggggcggttcccggtctggtggcgctgctgcggtgcagcgatccgtggacgcaggaacacgcggtgacggcgttgctgaatctgtctcttctggaggagaacaaggcgctgataaccaatgcaggggcggtgaagtcattaatttatgtgctgaaaacggggacggagagttcgaagcagaacgcggcgtgtgcgctgatgagtctggcgttggtggaagagaacaggggttccataggggccagcggggcgataccgccgctggtgtcgctgctgatgagtgggtcccacagagggaagaaggacgcgctgacgacgctgtataagctgtgttcggtgaggcagaacaaggagagggcggtgagcgcaggggcggtgaggccgctggtggcgcttgtggcggagcaggggagcggtatggcggataaggccatggtggtgctgaacagcttggccgggattgaggaggggaaggaggccattgtggaggaaggtgggattgctgcgcttgtggaagccattgaagatgggtccttgaagggaaaggagttcgctgttttcactcttgttcagctctgttctcacagcgttaccaaccgagcattgcttgtcagggagggtggaattcctcctctcgttgctctttcgcagaccggctctgttccagctaagctcaaggcatgtaacttcctacttcccttgttaatttcccttcccttcccttcttttcttctttcaactttccttctgcttccttttccaggctga 1287 0.0 MVSTEKDTSKAGRTIGKSMRTVRSILFQREEATCVSDTLSLTDSLIQLASRNSKSIKSSVTEDQLLELSEALSDFSACSSDISGELHRLASVSSSHPEAEAEAEPEPCVGFLQRDSFSTEIIDSISPEDLQPTVKICVEGLQSASEAVKRSAAAKLRLLAKNRADNRALIGECGAVPGLVALLRCSDPWTQEHAVTALLNLSLLEENKALITNAGAVKSLIYVLKTGTESSKQNAACALMSLALVEENRGSIGASGAIPPLVSLLMSGSHRGKKDALTTLYKLCSVRQNKERAVSAGAVRPLVALVAEQGSGMADKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEDGSLKGKEFAVFTLVQLCSHSVTNRALLVREGGIPPLVALSQTGSVPAKLKACNFLLPLLISLPFPSFLLSTFLLLPFPG 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04453 428 Gene3D - 208 312 IPR011989 -
Pste6g04453 428 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 174 216 IPR000225 GO:0005515
Pste6g04453 428 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 256 298 IPR000225 GO:0005515
Pste6g04453 428 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 297 339 IPR000225 GO:0005515
Pste6g04453 428 FunFam U-box domain-containing protein 4 120 272 - -
Pste6g04453 428 SUPERFAMILY ARM repeat 131 408 IPR016024 -
Pste6g04453 428 Pfam Armadillo/beta-catenin-like repeat 165 202 IPR000225 GO:0005515
Pste6g04453 428 Pfam Armadillo/beta-catenin-like repeat 247 285 IPR000225 GO:0005515
Pste6g04453 428 Gene3D - 30 207 IPR011989 -
Pste6g04453 428 Gene3D - 313 415 IPR011989 -
Pste6g04453 428 SMART arm_5 204 244 IPR000225 GO:0005515
Pste6g04453 428 SMART arm_5 163 203 IPR000225 GO:0005515
Pste6g04453 428 SMART arm_5 245 285 IPR000225 GO:0005515
Pste6g04453 428 SMART arm_5 369 409 IPR000225 GO:0005515
Pste6g04453 428 SMART arm_5 327 367 IPR000225 GO:0005515
Pste6g04453 428 PANTHER U BOX DOMAIN-CONTAINING 99 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04453 Pste-Chr6 33854848 33869936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04453 129 404 U-box Gene Family AT2G23140 49.638 5.73e-73 239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04453 6 33854848 33869936 Pste2g02659 2 26835856 26838125 PCT